| Motif | RFX6.H14INVIVO.0.P.C |
| Gene (human) | RFX6 (GeneCards) |
| Gene synonyms (human) | RFXDC1 |
| Gene (mouse) | Rfx6 |
| Gene synonyms (mouse) | Rfxdc1 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | C |
| Motif | RFX6.H14INVIVO.0.P.C |
| Gene (human) | RFX6 (GeneCards) |
| Gene synonyms (human) | RFXDC1 |
| Gene (mouse) | Rfx6 |
| Gene synonyms (mouse) | Rfxdc1 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | C |
| Motif length | 11 |
| Consensus | bdGTTKCCRKG |
| GC content | 59.09% |
| Information content (bits; total / per base) | 11.681 / 1.062 |
| Data sources | ChIP-Seq |
| Aligned words | 1000 |
| Previous names | RFX6.H12INVIVO.0.P.C |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Mouse | 1 (6) | 0.884 | 0.899 | 0.78 | 0.812 | 0.853 | 0.866 | 2.96 | 3.079 | 123.901 | 140.569 |
| rSNP benchmarking, SNP-SELEX | auROC | auPRC | Pearson r | Kendall tau |
|---|---|---|---|---|
| batch 1 | 0.76 | 0.395 | 0.741 | 0.523 |
| batch 2 | 0.78 | 0.625 | 0.838 | 0.6 |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Fork head/winged helix factors {3.3} (TFClass) |
| TF family | RFX {3.3.3} (TFClass) |
| TF subfamily | {3.3.3.0} (TFClass) |
| TFClass ID | TFClass: 3.3.3.0.6 |
| HGNC | HGNC:21478 |
| MGI | MGI:2445208 |
| EntrezGene (human) | GeneID:222546 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:320995 (SSTAR profile) |
| UniProt ID (human) | RFX6_HUMAN |
| UniProt ID (mouse) | RFX6_MOUSE |
| UniProt AC (human) | Q8HWS3 (TFClass) |
| UniProt AC (mouse) | Q8C7R7 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 1 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 0 |
| Genomic HT-SELEX | 0 overall: 0 Lysate, 0 IVT, 0 GFPIVT |
| SMiLE-Seq | 0 |
| PBM | 0 |
| PCM | RFX6.H14INVIVO.0.P.C.pcm |
| PWM | RFX6.H14INVIVO.0.P.C.pwm |
| PFM | RFX6.H14INVIVO.0.P.C.pfm |
| Threshold to P-value map | RFX6.H14INVIVO.0.P.C.thr |
| Motif in other formats | |
| JASPAR format | RFX6.H14INVIVO.0.P.C_jaspar_format.txt |
| MEME format | RFX6.H14INVIVO.0.P.C_meme_format.meme |
| Transfac format | RFX6.H14INVIVO.0.P.C_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 110.0 | 421.0 | 229.0 | 240.0 |
| 02 | 101.0 | 73.0 | 425.0 | 401.0 |
| 03 | 3.0 | 2.0 | 994.0 | 1.0 |
| 04 | 24.0 | 105.0 | 9.0 | 862.0 |
| 05 | 38.0 | 30.0 | 4.0 | 928.0 |
| 06 | 80.0 | 46.0 | 744.0 | 130.0 |
| 07 | 0.0 | 968.0 | 3.0 | 29.0 |
| 08 | 2.0 | 612.0 | 2.0 | 384.0 |
| 09 | 594.0 | 51.0 | 181.0 | 174.0 |
| 10 | 171.0 | 9.0 | 611.0 | 209.0 |
| 11 | 13.0 | 4.0 | 977.0 | 6.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.11 | 0.421 | 0.229 | 0.24 |
| 02 | 0.101 | 0.073 | 0.425 | 0.401 |
| 03 | 0.003 | 0.002 | 0.994 | 0.001 |
| 04 | 0.024 | 0.105 | 0.009 | 0.862 |
| 05 | 0.038 | 0.03 | 0.004 | 0.928 |
| 06 | 0.08 | 0.046 | 0.744 | 0.13 |
| 07 | 0.0 | 0.968 | 0.003 | 0.029 |
| 08 | 0.002 | 0.612 | 0.002 | 0.384 |
| 09 | 0.594 | 0.051 | 0.181 | 0.174 |
| 10 | 0.171 | 0.009 | 0.611 | 0.209 |
| 11 | 0.013 | 0.004 | 0.977 | 0.006 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.812 | 0.518 | -0.087 | -0.041 |
| 02 | -0.896 | -1.215 | 0.528 | 0.47 |
| 03 | -3.975 | -4.213 | 1.375 | -4.525 |
| 04 | -2.281 | -0.858 | -3.156 | 1.233 |
| 05 | -1.846 | -2.071 | -3.783 | 1.307 |
| 06 | -1.125 | -1.663 | 1.086 | -0.648 |
| 07 | -4.982 | 1.349 | -3.975 | -2.103 |
| 08 | -4.213 | 0.891 | -4.213 | 0.427 |
| 09 | 0.861 | -1.563 | -0.32 | -0.359 |
| 10 | -0.377 | -3.156 | 0.89 | -0.178 |
| 11 | -2.839 | -3.783 | 1.358 | -3.484 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.193485 |
| 0.0005 | 5.23443 |
| 0.0001 | 7.389535 |