RELB.H14INVIVO.0.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	RELB.H14INVIVO.0.P.B
Gene (human)	RELB (GeneCards)
Gene synonyms (human)
Gene (mouse)	Relb
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	B

Motif length	12
Consensus	GGGRvTTTCCdv
GC content	57.19%
Information content (bits; total / per base)	14.171 / 1.181
Data sources	ChIP-Seq
Aligned words	1000
Previous names	RELB.H12INVIVO.0.P.B

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	3 (15)	0.869	0.974	0.856	0.956	0.825	0.946	3.628	4.586	60.06	674.26
Mouse	1 (7)	0.787	0.855	0.701	0.802	0.723	0.79	2.398	2.744	38.022	41.523

rSNP benchmarking, ADASTRA	odds-ratio	-log-Fisher's P	Pearson r	Kendall tau
#	8.566	2.655	0.369	0.206

TF superclass	Immunoglobulin fold {6} (TFClass)
TF class	Rel homology region (RHR) factors {6.1} (TFClass)
TF family	NFkappaB-related {6.1.1} (TFClass)
TF subfamily	NFkappaB p65-like {6.1.1.2} (TFClass)
TFClass ID	TFClass: 6.1.1.2.2
HGNC	HGNC:9956
MGI	MGI:103289
EntrezGene (human)	GeneID:5971 (SSTAR profile)
EntrezGene (mouse)	GeneID:19698 (SSTAR profile)
UniProt ID (human)	RELB_HUMAN
UniProt ID (mouse)	RELB_MOUSE
UniProt AC (human)	Q01201 (TFClass)
UniProt AC (mouse)	Q04863 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	3 human, 1 mouse
HT-SELEX	0
Methyl-HT-SELEX	0
Genomic HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	RELB.H14INVIVO.0.P.B.pcm
PWM	RELB.H14INVIVO.0.P.B.pwm
PFM	RELB.H14INVIVO.0.P.B.pfm
Threshold to P-value map	RELB.H14INVIVO.0.P.B.thr
Motif in other formats
JASPAR format	RELB.H14INVIVO.0.P.B_jaspar_format.txt
MEME format	RELB.H14INVIVO.0.P.B_meme_format.meme
Transfac format	RELB.H14INVIVO.0.P.B_transfac_format.txt
Homer format	RELB.H14INVIVO.0.P.B_homer_format_0.001.txt RELB.H14INVIVO.0.P.B_homer_format_0.0005.txt RELB.H14INVIVO.0.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	2.0	1.0	988.0	9.0
02	0.0	2.0	995.0	3.0
03	2.0	0.0	851.0	147.0
04	458.0	3.0	491.0	48.0
05	300.0	393.0	263.0	44.0
06	110.0	15.0	9.0	866.0
07	4.0	27.0	2.0	967.0
08	26.0	116.0	7.0	851.0
09	4.0	951.0	2.0	43.0
10	12.0	914.0	3.0	71.0
11	561.0	111.0	117.0	211.0
12	251.0	214.0	388.0	147.0

PFM

	A	C	G	T
01	0.002	0.001	0.988	0.009
02	0.0	0.002	0.995	0.003
03	0.002	0.0	0.851	0.147
04	0.458	0.003	0.491	0.048
05	0.3	0.393	0.263	0.044
06	0.11	0.015	0.009	0.866
07	0.004	0.027	0.002	0.967
08	0.026	0.116	0.007	0.851
09	0.004	0.951	0.002	0.043
10	0.012	0.914	0.003	0.071
11	0.561	0.111	0.117	0.211
12	0.251	0.214	0.388	0.147

PWM

	A	C	G	T
01	-4.213	-4.525	1.369	-3.156
02	-4.982	-4.213	1.376	-3.975
03	-4.213	-4.982	1.22	-0.526
04	0.602	-3.975	0.672	-1.622
05	0.181	0.45	0.05	-1.706
06	-0.812	-2.711	-3.156	1.238
07	-3.783	-2.171	-4.213	1.348
08	-2.206	-0.76	-3.362	1.22
09	-3.783	1.331	-4.213	-1.728
10	-2.909	1.291	-3.975	-1.242
11	0.804	-0.803	-0.752	-0.168
12	0.004	-0.154	0.437	-0.526

Standard thresholds

P-value	Threshold
0.001	2.94781
0.0005	4.21384
0.0001	6.743615