MotifPRD13.H14INVITRO.0.PSGI.A
Gene (human)PRDM13
(GeneCards)
Gene synonyms (human)PFM10
Gene (mouse)Prdm13
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
A
Motif length11
ConsensusbdRCWGGTGGY
GC content66.32%
Information content (bits; total / per base)13.367 / 1.215
Data sourcesChIP-Seq + HT-SELEX + Genomic HT-SELEX + SMiLe-Seq
Aligned words8892
Previous names

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best Centrality, median Centrality, best
Overall 2 (2) 0.825 0.837 0.682 0.687 0.748 0.756 111.465 118.009

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
overall, 5 experiments median 0.992 0.989 0.944 0.934 0.808 0.813
best 0.999 0.999 0.999 0.998 0.999 0.998
Lysate, 2 experiments median 0.978 0.971 0.89 0.882 0.755 0.764
best 0.989 0.984 0.944 0.934 0.808 0.813
IVT, 1 experiments median 0.992 0.989 0.898 0.897 0.734 0.758
best 0.992 0.989 0.898 0.897 0.734 0.758
GFPIVT, 2 experiments median 0.997 0.996 0.989 0.985 0.922 0.927
best 0.999 0.999 0.999 0.998 0.999 0.998

Genomic HT-SELEX benchmarking Centrality pseudo-auROC auROC auPR
overall, 5 experiments median 205.907 0.871 0.941 0.879
best 520.18 0.965 0.976 0.941
Lysate, 2 experiments median 447.023 0.875 0.946 0.88
best 448.699 0.88 0.948 0.88
IVT, 1 experiments median 169.959 0.873 0.937 0.878
best 169.959 0.873 0.937 0.878
GFPIVT, 2 experiments median 139.638 0.865 0.925 0.836
best 520.18 0.965 0.976 0.941

SMiLE-Seq benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 1 experiments median 0.949 0.922 0.873 0.846 0.743 0.74
best 0.949 0.922 0.873 0.846 0.743 0.74
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMultiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamilyUnclassified {2.3.4.0} (TFClass)
TFClass IDTFClass: 2.3.4.0.12
HGNCHGNC:13998
MGIMGI:2448528
EntrezGene (human)GeneID:59336
(SSTAR profile)
EntrezGene (mouse)GeneID:230025
(SSTAR profile)
UniProt ID (human)PRD13_HUMAN
UniProt ID (mouse)PRD13_MOUSE
UniProt AC (human)Q9H4Q3
(TFClass)
UniProt AC (mouse)E9PZZ1
(TFClass)
GRECO-DB-TF
no
ChIP-Seq 2 human, 0 mouse
HT-SELEX 5 overall: 2 Lysate, 1 IVT, 2 GFPIVT
Genomic HT-SELEX 5 overall: 2 Lysate, 1 IVT, 2 GFPIVT
SMiLE-Seq 1
PBM 0
PCM
ACGT
01859.02451.01877.03705.0
023316.5398.53535.51641.5
032815.0205.05667.0205.0
0478.08419.0253.0142.0
055387.05.0571.02929.0
060.00.08892.00.0
070.01.08891.00.0
080.01.00.08891.0
09152.037.08654.049.0
10239.75348.757970.75332.75
11330.255628.251064.251869.25
PFM
ACGT
010.0970.2760.2110.417
020.3730.0450.3980.185
030.3170.0230.6370.023
040.0090.9470.0280.016
050.6060.0010.0640.329
060.00.01.00.0
070.00.01.00.0
080.00.00.01.0
090.0170.0040.9730.006
100.0270.0390.8960.037
110.0370.6330.120.21
PWM
ACGT
01-0.9490.098-0.1690.51
020.4-1.7140.464-0.303
030.236-2.3740.935-2.374
04-3.3221.331-2.165-2.736
050.885-5.723-1.3560.276
06-6.886-6.8861.386-6.886
07-6.886-6.5221.385-6.886
08-6.886-6.522-6.8861.385
09-2.669-4.0371.358-3.77
10-2.219-1.8471.276-1.893
11-1.9010.928-0.735-0.173
Standard thresholds
P-value Threshold
0.001 2.82567
0.0005 4.286975
0.0001 7.024995