MotifPRD10.H14INVITRO.0.PSGI.A
Gene (human)PRDM10
(GeneCards)
Gene synonyms (human)KIAA1231, PFM7, TRIS
Gene (mouse)Prdm10
Gene synonyms (mouse)Gm1112, Tris
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
A
Motif length18
ConsensusvhMWTGGTAYvdYCCRhh
GC content45.56%
Information content (bits; total / per base)16.193 / 0.9
Data sourcesChIP-Seq + HT-SELEX + Genomic HT-SELEX + SMiLe-Seq
Aligned words8540
Previous names

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best Centrality, median Centrality, best
Overall 2 (2) 0.672 0.683 0.56 0.58 0.581 0.585 23.655 25.167

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
overall, 3 experiments median 0.999 0.999 0.856 0.869 0.692 0.728
best 1.0 1.0 1.0 1.0 1.0 0.999
Lysate, 2 experiments median 0.982 0.982 0.817 0.831 0.67 0.703
best 0.999 0.999 0.856 0.869 0.692 0.728
GFPIVT, 1 experiments median 1.0 1.0 1.0 1.0 1.0 0.999
best 1.0 1.0 1.0 1.0 1.0 0.999

Genomic HT-SELEX benchmarking Centrality pseudo-auROC auROC auPR
GFPIVT, 1 experiments median 335.772 0.918 0.931 0.899
best 501.658 0.925 0.938 0.905

SMiLE-Seq benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 1 experiments median 0.933 0.907 0.829 0.805 0.719 0.711
best 0.933 0.907 0.829 0.805 0.719 0.711
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMultiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamilyUnclassified {2.3.4.0} (TFClass)
TFClass IDTFClass: 2.3.4.0.34
HGNCHGNC:13995
MGIMGI:2682952
EntrezGene (human)GeneID:56980
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)PRD10_HUMAN
UniProt ID (mouse)PRD10_MOUSE
UniProt AC (human)Q9NQV6
(TFClass)
UniProt AC (mouse)Q3UTQ7
(TFClass)
GRECO-DB-TF
no
ChIP-Seq 2 human, 0 mouse
HT-SELEX 3 overall: 2 Lysate, 0 IVT, 1 GFPIVT
Genomic HT-SELEX 1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
SMiLE-Seq 1
PBM 0
PCM
ACGT
012812.02962.01385.01381.0
024172.751650.751043.751672.75
035262.01666.01136.0476.0
045938.046.0604.01952.0
0536.018.019.08467.0
0622.044.08426.048.0
0711.020.08491.018.0
08357.017.027.08139.0
097392.0342.051.0755.0
1068.04843.0317.03312.0
113151.02239.03008.0142.0
121304.0683.03755.02798.0
13239.02461.0298.05542.0
14154.08042.0193.0151.0
15149.07706.0310.0375.0
165473.0384.01680.01003.0
172604.251937.251037.252961.25
181922.752018.751178.753419.75
PFM
ACGT
010.3290.3470.1620.162
020.4890.1930.1220.196
030.6160.1950.1330.056
040.6950.0050.0710.229
050.0040.0020.0020.991
060.0030.0050.9870.006
070.0010.0020.9940.002
080.0420.0020.0030.953
090.8660.040.0060.088
100.0080.5670.0370.388
110.3690.2620.3520.017
120.1530.080.440.328
130.0280.2880.0350.649
140.0180.9420.0230.018
150.0170.9020.0360.044
160.6410.0450.1970.117
170.3050.2270.1210.347
180.2250.2360.1380.4
PWM
ACGT
010.2750.327-0.432-0.435
020.67-0.257-0.715-0.244
030.901-0.248-0.63-1.497
041.022-3.791-1.26-0.09
05-4.023-4.658-4.611.377
06-4.478-3.8331.372-3.75
07-5.082-4.5641.38-4.658
08-1.783-4.709-4.2911.337
091.241-1.826-3.692-1.038
10-3.4150.818-1.9010.439
110.3890.0480.343-2.696
12-0.492-1.1370.5640.27
13-2.1810.142-1.9630.953
14-2.6161.325-2.393-2.635
15-2.6481.283-1.923-1.734
160.941-1.711-0.239-0.754
170.198-0.097-0.7210.327
18-0.105-0.056-0.5930.471
Standard thresholds
P-value Threshold
0.001 1.89676
0.0005 3.24626
0.0001 6.05251