| Motif | PO2F3.H14INVIVO.0.PS.A |
| Gene (human) | POU2F3 (GeneCards) |
| Gene synonyms (human) | OTF11, PLA1 |
| Gene (mouse) | Pou2f3 |
| Gene synonyms (mouse) | Epoc1, Oct11, Otf-11, Otf11 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | A |
| Motif | PO2F3.H14INVIVO.0.PS.A |
| Gene (human) | POU2F3 (GeneCards) |
| Gene synonyms (human) | OTF11, PLA1 |
| Gene (mouse) | Pou2f3 |
| Gene synonyms (mouse) | Epoc1, Oct11, Otf-11, Otf11 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | A |
| Motif length | 10 |
| Consensus | dYATGCAAAK |
| GC content | 26.98% |
| Information content (bits; total / per base) | 13.284 / 1.328 |
| Data sources | ChIP-Seq + HT-SELEX |
| Aligned words | 988 |
| Previous names | PO2F3.H12INVIVO.0.PS.A |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Mouse | 1 (6) | 0.89 | 0.908 | 0.847 | 0.866 | 0.89 | 0.903 | 4.091 | 4.18 | 187.914 | 216.42 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Non-Methyl HT-SELEX, 2 experiments | median | 0.993 | 0.99 | 0.958 | 0.949 | 0.844 | 0.844 |
| best | 0.994 | 0.991 | 0.96 | 0.952 | 0.846 | 0.846 | |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Homeo domain factors {3.1} (TFClass) |
| TF family | POU {3.1.10} (TFClass) |
| TF subfamily | POU2 {3.1.10.2} (TFClass) |
| TFClass ID | TFClass: 3.1.10.2.3 |
| HGNC | HGNC:19864 |
| MGI | MGI:102565 |
| EntrezGene (human) | GeneID:25833 (SSTAR profile) |
| EntrezGene (mouse) | |
| UniProt ID (human) | PO2F3_HUMAN |
| UniProt ID (mouse) | PO2F3_MOUSE |
| UniProt AC (human) | Q9UKI9 (TFClass) |
| UniProt AC (mouse) | P31362 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 1 mouse |
| HT-SELEX | 2 |
| Methyl-HT-SELEX | 0 |
| Genomic HT-SELEX | 0 overall: 0 Lysate, 0 IVT, 0 GFPIVT |
| SMiLE-Seq | 0 |
| PBM | 0 |
| PCM | PO2F3.H14INVIVO.0.PS.A.pcm |
| PWM | PO2F3.H14INVIVO.0.PS.A.pwm |
| PFM | PO2F3.H14INVIVO.0.PS.A.pfm |
| Threshold to P-value map | PO2F3.H14INVIVO.0.PS.A.thr |
| Motif in other formats | |
| JASPAR format | PO2F3.H14INVIVO.0.PS.A_jaspar_format.txt |
| MEME format | PO2F3.H14INVIVO.0.PS.A_meme_format.meme |
| Transfac format | PO2F3.H14INVIVO.0.PS.A_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 486.0 | 150.0 | 154.0 | 198.0 |
| 02 | 135.0 | 229.0 | 43.0 | 581.0 |
| 03 | 958.0 | 9.0 | 4.0 | 17.0 |
| 04 | 37.0 | 6.0 | 40.0 | 905.0 |
| 05 | 9.0 | 2.0 | 936.0 | 41.0 |
| 06 | 12.0 | 866.0 | 47.0 | 63.0 |
| 07 | 968.0 | 6.0 | 3.0 | 11.0 |
| 08 | 968.0 | 6.0 | 7.0 | 7.0 |
| 09 | 974.0 | 8.0 | 5.0 | 1.0 |
| 10 | 76.0 | 43.0 | 102.0 | 767.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.492 | 0.152 | 0.156 | 0.2 |
| 02 | 0.137 | 0.232 | 0.044 | 0.588 |
| 03 | 0.97 | 0.009 | 0.004 | 0.017 |
| 04 | 0.037 | 0.006 | 0.04 | 0.916 |
| 05 | 0.009 | 0.002 | 0.947 | 0.041 |
| 06 | 0.012 | 0.877 | 0.048 | 0.064 |
| 07 | 0.98 | 0.006 | 0.003 | 0.011 |
| 08 | 0.98 | 0.006 | 0.007 | 0.007 |
| 09 | 0.986 | 0.008 | 0.005 | 0.001 |
| 10 | 0.077 | 0.044 | 0.103 | 0.776 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.673 | -0.494 | -0.468 | -0.219 |
| 02 | -0.598 | -0.075 | -1.716 | 0.851 |
| 03 | 1.35 | -3.144 | -3.772 | -2.587 |
| 04 | -1.86 | -3.472 | -1.785 | 1.293 |
| 05 | -3.144 | -4.202 | 1.327 | -1.762 |
| 06 | -2.897 | 1.25 | -1.63 | -1.346 |
| 07 | 1.361 | -3.472 | -3.964 | -2.973 |
| 08 | 1.361 | -3.472 | -3.35 | -3.35 |
| 09 | 1.367 | -3.242 | -3.611 | -4.514 |
| 10 | -1.163 | -1.716 | -0.875 | 1.128 |
| P-value | Threshold |
|---|---|
| 0.001 | 3.48608 |
| 0.0005 | 4.643765 |
| 0.0001 | 7.003715 |