| Motif | PATZ1.H14RSNP.1.P.D |
| Gene (human) | PATZ1 (GeneCards) |
| Gene synonyms (human) | PATZ, RIAZ, ZBTB19, ZNF278, ZSG |
| Gene (mouse) | |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 1 |
| Quality | D |
| Motif | PATZ1.H14RSNP.1.P.D |
| Gene (human) | PATZ1 (GeneCards) |
| Gene synonyms (human) | PATZ, RIAZ, ZBTB19, ZNF278, ZSG |
| Gene (mouse) | |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 1 |
| Quality | D |
| Motif length | 10 |
| Consensus | vRRGGMGGGG |
| GC content | 78.45% |
| Information content (bits; total / per base) | 11.568 / 1.157 |
| Data sources | ChIP-Seq |
| Aligned words | 960 |
| Previous names | PATZ1.H12RSNP.1.P.D |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 2 (12) | 0.706 | 0.724 | 0.478 | 0.514 | 0.768 | 0.802 | 2.04 | 2.199 | 10.77 | 32.921 |
| TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
| TF class | C2H2 zinc finger factors {2.3} (TFClass) |
| TF family | Multiple dispersed zinc fingers {2.3.4} (TFClass) |
| TF subfamily | MAZ-like {2.3.4.8} (TFClass) |
| TFClass ID | TFClass: 2.3.4.8.3 |
| HGNC | HGNC:13071 |
| MGI | |
| EntrezGene (human) | GeneID:23598 (SSTAR profile) |
| EntrezGene (mouse) | |
| UniProt ID (human) | PATZ1_HUMAN |
| UniProt ID (mouse) | |
| UniProt AC (human) | Q9HBE1 (TFClass) |
| UniProt AC (mouse) | |
| GRECO-DB-TF | yes |
| ChIP-Seq | 2 human, 0 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 0 |
| Genomic HT-SELEX | 0 overall: 0 Lysate, 0 IVT, 0 GFPIVT |
| SMiLE-Seq | 0 |
| PBM | 0 |
| PCM | PATZ1.H14RSNP.1.P.D.pcm |
| PWM | PATZ1.H14RSNP.1.P.D.pwm |
| PFM | PATZ1.H14RSNP.1.P.D.pfm |
| Threshold to P-value map | PATZ1.H14RSNP.1.P.D.thr |
| Motif in other formats | |
| JASPAR format | PATZ1.H14RSNP.1.P.D_jaspar_format.txt |
| MEME format | PATZ1.H14RSNP.1.P.D_meme_format.meme |
| Transfac format | PATZ1.H14RSNP.1.P.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 298.0 | 116.0 | 462.0 | 84.0 |
| 02 | 258.0 | 46.0 | 621.0 | 35.0 |
| 03 | 163.0 | 10.0 | 713.0 | 74.0 |
| 04 | 17.0 | 5.0 | 926.0 | 12.0 |
| 05 | 6.0 | 1.0 | 948.0 | 5.0 |
| 06 | 581.0 | 340.0 | 1.0 | 38.0 |
| 07 | 164.0 | 9.0 | 757.0 | 30.0 |
| 08 | 9.0 | 8.0 | 841.0 | 102.0 |
| 09 | 48.0 | 4.0 | 883.0 | 25.0 |
| 10 | 93.0 | 9.0 | 831.0 | 27.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.31 | 0.121 | 0.481 | 0.088 |
| 02 | 0.269 | 0.048 | 0.647 | 0.036 |
| 03 | 0.17 | 0.01 | 0.743 | 0.077 |
| 04 | 0.018 | 0.005 | 0.965 | 0.013 |
| 05 | 0.006 | 0.001 | 0.988 | 0.005 |
| 06 | 0.605 | 0.354 | 0.001 | 0.04 |
| 07 | 0.171 | 0.009 | 0.789 | 0.031 |
| 08 | 0.009 | 0.008 | 0.876 | 0.106 |
| 09 | 0.05 | 0.004 | 0.92 | 0.026 |
| 10 | 0.097 | 0.009 | 0.866 | 0.028 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.215 | -0.719 | 0.652 | -1.037 |
| 02 | 0.072 | -1.622 | 0.946 | -1.885 |
| 03 | -0.384 | -3.027 | 1.084 | -1.161 |
| 04 | -2.558 | -3.583 | 1.345 | -2.869 |
| 05 | -3.444 | -4.488 | 1.368 | -3.583 |
| 06 | 0.88 | 0.346 | -4.488 | -1.806 |
| 07 | -0.377 | -3.116 | 1.144 | -2.031 |
| 08 | -3.116 | -3.214 | 1.249 | -0.846 |
| 09 | -1.581 | -3.744 | 1.298 | -2.202 |
| 10 | -0.937 | -3.116 | 1.237 | -2.13 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.27659 |
| 0.0005 | 5.267865 |
| 0.0001 | 7.254475 |