| Motif | NPAS4.H14INVIVO.0.P.B |
| Gene (human) | NPAS4 (GeneCards) |
| Gene synonyms (human) | BHLHE79, NXF, PASD10 |
| Gene (mouse) | Npas4 |
| Gene synonyms (mouse) | Nxf |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | B |
| Motif | NPAS4.H14INVIVO.0.P.B |
| Gene (human) | NPAS4 (GeneCards) |
| Gene synonyms (human) | BHLHE79, NXF, PASD10 |
| Gene (mouse) | Npas4 |
| Gene synonyms (mouse) | Nxf |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | B |
| Motif length | 11 |
| Consensus | dvnKCGTGMbb |
| GC content | 55.72% |
| Information content (bits; total / per base) | 9.484 / 0.862 |
| Data sources | ChIP-Seq |
| Aligned words | 998 |
| Previous names | NPAS4.H12INVIVO.0.P.B |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Mouse | 6 (33) | 0.893 | 0.929 | 0.813 | 0.851 | 0.794 | 0.858 | 2.595 | 2.843 | 157.432 | 231.854 |
| TF superclass | Basic domains {1} (TFClass) |
| TF class | Basic helix-loop-helix factors (bHLH) {1.2} (TFClass) |
| TF family | PAS {1.2.5} (TFClass) |
| TF subfamily | NPAS4 {1.2.5.4} (TFClass) |
| TFClass ID | TFClass: 1.2.5.4.1 |
| HGNC | HGNC:18983 |
| MGI | MGI:2664186 |
| EntrezGene (human) | GeneID:266743 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:225872 (SSTAR profile) |
| UniProt ID (human) | NPAS4_HUMAN |
| UniProt ID (mouse) | NPAS4_MOUSE |
| UniProt AC (human) | Q8IUM7 (TFClass) |
| UniProt AC (mouse) | Q8BGD7 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 6 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 0 |
| Genomic HT-SELEX | 0 overall: 0 Lysate, 0 IVT, 0 GFPIVT |
| SMiLE-Seq | 0 |
| PBM | 0 |
| PCM | NPAS4.H14INVIVO.0.P.B.pcm |
| PWM | NPAS4.H14INVIVO.0.P.B.pwm |
| PFM | NPAS4.H14INVIVO.0.P.B.pfm |
| Threshold to P-value map | NPAS4.H14INVIVO.0.P.B.thr |
| Motif in other formats | |
| JASPAR format | NPAS4.H14INVIVO.0.P.B_jaspar_format.txt |
| MEME format | NPAS4.H14INVIVO.0.P.B_meme_format.meme |
| Transfac format | NPAS4.H14INVIVO.0.P.B_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 258.0 | 148.0 | 435.0 | 157.0 |
| 02 | 374.0 | 250.0 | 256.0 | 118.0 |
| 03 | 301.0 | 130.0 | 331.0 | 236.0 |
| 04 | 58.0 | 61.0 | 199.0 | 680.0 |
| 05 | 1.0 | 987.0 | 6.0 | 4.0 |
| 06 | 14.0 | 4.0 | 979.0 | 1.0 |
| 07 | 2.0 | 1.0 | 1.0 | 994.0 |
| 08 | 0.0 | 3.0 | 992.0 | 3.0 |
| 09 | 576.0 | 251.0 | 15.0 | 156.0 |
| 10 | 88.0 | 472.0 | 197.0 | 241.0 |
| 11 | 186.0 | 208.0 | 191.0 | 413.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.259 | 0.148 | 0.436 | 0.157 |
| 02 | 0.375 | 0.251 | 0.257 | 0.118 |
| 03 | 0.302 | 0.13 | 0.332 | 0.236 |
| 04 | 0.058 | 0.061 | 0.199 | 0.681 |
| 05 | 0.001 | 0.989 | 0.006 | 0.004 |
| 06 | 0.014 | 0.004 | 0.981 | 0.001 |
| 07 | 0.002 | 0.001 | 0.001 | 0.996 |
| 08 | 0.0 | 0.003 | 0.994 | 0.003 |
| 09 | 0.577 | 0.252 | 0.015 | 0.156 |
| 10 | 0.088 | 0.473 | 0.197 | 0.241 |
| 11 | 0.186 | 0.208 | 0.191 | 0.414 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.033 | -0.518 | 0.553 | -0.459 |
| 02 | 0.403 | 0.002 | 0.026 | -0.741 |
| 03 | 0.186 | -0.646 | 0.281 | -0.055 |
| 04 | -1.437 | -1.388 | -0.224 | 0.998 |
| 05 | -4.523 | 1.37 | -3.482 | -3.781 |
| 06 | -2.771 | -3.781 | 1.362 | -4.523 |
| 07 | -4.211 | -4.523 | -4.523 | 1.377 |
| 08 | -4.98 | -3.973 | 1.375 | -3.973 |
| 09 | 0.833 | 0.006 | -2.709 | -0.465 |
| 10 | -1.03 | 0.634 | -0.234 | -0.034 |
| 11 | -0.291 | -0.181 | -0.265 | 0.501 |
| P-value | Threshold |
|---|---|
| 0.001 | 5.252965 |
| 0.0005 | 6.117995 |
| 0.0001 | 7.45254 |