| Motif | NFIL3.H14INVIVO.0.P.B |
| Gene (human) | NFIL3 (GeneCards) |
| Gene synonyms (human) | E4BP4, IL3BP1 |
| Gene (mouse) | Nfil3 |
| Gene synonyms (mouse) | E4bp4 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | B |
| Motif | NFIL3.H14INVIVO.0.P.B |
| Gene (human) | NFIL3 (GeneCards) |
| Gene synonyms (human) | E4BP4, IL3BP1 |
| Gene (mouse) | Nfil3 |
| Gene synonyms (mouse) | E4bp4 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | B |
| Motif length | 10 |
| Consensus | vTTATGYAAY |
| GC content | 29.09% |
| Information content (bits; total / per base) | 12.903 / 1.29 |
| Data sources | ChIP-Seq |
| Aligned words | 1000 |
| Previous names | NFIL3.H12INVIVO.0.P.B |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 2 (14) | 0.958 | 0.975 | 0.913 | 0.932 | 0.956 | 0.976 | 4.586 | 4.913 | 533.28 | 606.347 |
| Mouse | 1 (4) | 0.913 | 0.943 | 0.871 | 0.913 | 0.896 | 0.93 | 4.07 | 4.414 | 340.142 | 416.092 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Non-Methyl HT-SELEX, 2 experiments | median | 0.911 | 0.909 | 0.826 | 0.835 | 0.744 | 0.763 |
| best | 0.998 | 0.997 | 0.997 | 0.994 | 0.914 | 0.925 | |
| TF superclass | Basic domains {1} (TFClass) |
| TF class | Basic leucine zipper factors (bZIP) {1.1} (TFClass) |
| TF family | C/EBP-related {1.1.8} (TFClass) |
| TF subfamily | PAR {1.1.8.2} (TFClass) |
| TFClass ID | TFClass: 1.1.8.2.3 |
| HGNC | HGNC:7787 |
| MGI | MGI:109495 |
| EntrezGene (human) | GeneID:4783 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:18030 (SSTAR profile) |
| UniProt ID (human) | NFIL3_HUMAN |
| UniProt ID (mouse) | NFIL3_MOUSE |
| UniProt AC (human) | Q16649 (TFClass) |
| UniProt AC (mouse) | O08750 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 2 human, 1 mouse |
| HT-SELEX | 2 |
| Methyl-HT-SELEX | 0 |
| Genomic HT-SELEX | 0 overall: 0 Lysate, 0 IVT, 0 GFPIVT |
| SMiLE-Seq | 0 |
| PBM | 0 |
| PCM | NFIL3.H14INVIVO.0.P.B.pcm |
| PWM | NFIL3.H14INVIVO.0.P.B.pwm |
| PFM | NFIL3.H14INVIVO.0.P.B.pfm |
| Threshold to P-value map | NFIL3.H14INVIVO.0.P.B.thr |
| Motif in other formats | |
| JASPAR format | NFIL3.H14INVIVO.0.P.B_jaspar_format.txt |
| MEME format | NFIL3.H14INVIVO.0.P.B_meme_format.meme |
| Transfac format | NFIL3.H14INVIVO.0.P.B_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 346.0 | 167.0 | 447.0 | 40.0 |
| 02 | 0.0 | 2.0 | 2.0 | 996.0 |
| 03 | 2.0 | 1.0 | 198.0 | 799.0 |
| 04 | 905.0 | 4.0 | 71.0 | 20.0 |
| 05 | 22.0 | 77.0 | 37.0 | 864.0 |
| 06 | 41.0 | 8.0 | 946.0 | 5.0 |
| 07 | 20.0 | 308.0 | 1.0 | 671.0 |
| 08 | 923.0 | 76.0 | 0.0 | 1.0 |
| 09 | 997.0 | 1.0 | 1.0 | 1.0 |
| 10 | 15.0 | 441.0 | 121.0 | 423.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.346 | 0.167 | 0.447 | 0.04 |
| 02 | 0.0 | 0.002 | 0.002 | 0.996 |
| 03 | 0.002 | 0.001 | 0.198 | 0.799 |
| 04 | 0.905 | 0.004 | 0.071 | 0.02 |
| 05 | 0.022 | 0.077 | 0.037 | 0.864 |
| 06 | 0.041 | 0.008 | 0.946 | 0.005 |
| 07 | 0.02 | 0.308 | 0.001 | 0.671 |
| 08 | 0.923 | 0.076 | 0.0 | 0.001 |
| 09 | 0.997 | 0.001 | 0.001 | 0.001 |
| 10 | 0.015 | 0.441 | 0.121 | 0.423 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.323 | -0.4 | 0.578 | -1.797 |
| 02 | -4.982 | -4.213 | -4.213 | 1.377 |
| 03 | -4.213 | -4.525 | -0.231 | 1.157 |
| 04 | 1.281 | -3.783 | -1.242 | -2.45 |
| 05 | -2.362 | -1.162 | -1.872 | 1.235 |
| 06 | -1.774 | -3.253 | 1.326 | -3.622 |
| 07 | -2.45 | 0.207 | -4.525 | 0.983 |
| 08 | 1.301 | -1.175 | -4.982 | -4.525 |
| 09 | 1.378 | -4.525 | -4.525 | -4.525 |
| 10 | -2.711 | 0.565 | -0.718 | 0.523 |
| P-value | Threshold |
|---|---|
| 0.001 | 3.541055 |
| 0.0005 | 4.7762 |
| 0.0001 | 7.239295 |