| Motif | NFIA.H14INVITRO.0.P.B |
| Gene (human) | NFIA (GeneCards) |
| Gene synonyms (human) | KIAA1439 |
| Gene (mouse) | Nfia |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | B |
| Motif | NFIA.H14INVITRO.0.P.B |
| Gene (human) | NFIA (GeneCards) |
| Gene synonyms (human) | KIAA1439 |
| Gene (mouse) | Nfia |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | B |
| Motif length | 7 |
| Consensus | bYTGGCW |
| GC content | 61.46% |
| Information content (bits; total / per base) | 7.933 / 1.133 |
| Data sources | ChIP-Seq |
| Aligned words | 1027 |
| Previous names | NFIA.H12INVITRO.0.P.B |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 3 (21) | 0.763 | 0.79 | 0.589 | 0.63 | 0.606 | 0.619 | 1.142 | 1.182 | 114.432 | 189.824 |
| Mouse | 6 (28) | 0.785 | 0.911 | 0.685 | 0.863 | 0.615 | 0.736 | 1.208 | 1.545 | 49.539 | 72.959 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Non-Methyl HT-SELEX, 2 experiments | median | 0.99 | 0.987 | 0.968 | 0.959 | 0.828 | 0.844 |
| best | 0.996 | 0.996 | 0.99 | 0.985 | 0.89 | 0.899 | |
| rSNP benchmarking, ADASTRA | odds-ratio | -log-Fisher's P | Pearson r | Kendall tau |
|---|---|---|---|---|
| # | 3.137 | 1.023 | 0.222 | 0.075 |
| TF superclass | beta-Hairpin exposed by an alpha/beta-scaffold {7} (TFClass) |
| TF class | SMAD/NF-1 DNA-binding domain factors {7.1} (TFClass) |
| TF family | NF-1 {7.1.2} (TFClass) |
| TF subfamily | {7.1.2.0} (TFClass) |
| TFClass ID | TFClass: 7.1.2.0.1 |
| HGNC | HGNC:7784 |
| MGI | MGI:108056 |
| EntrezGene (human) | GeneID:4774 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:18027 (SSTAR profile) |
| UniProt ID (human) | NFIA_HUMAN |
| UniProt ID (mouse) | NFIA_MOUSE |
| UniProt AC (human) | Q12857 (TFClass) |
| UniProt AC (mouse) | Q02780 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 3 human, 6 mouse |
| HT-SELEX | 2 |
| Methyl-HT-SELEX | 0 |
| Genomic HT-SELEX | 0 overall: 0 Lysate, 0 IVT, 0 GFPIVT |
| SMiLE-Seq | 0 |
| PBM | 0 |
| PCM | NFIA.H14INVITRO.0.P.B.pcm |
| PWM | NFIA.H14INVITRO.0.P.B.pwm |
| PFM | NFIA.H14INVITRO.0.P.B.pfm |
| Threshold to P-value map | NFIA.H14INVITRO.0.P.B.thr |
| Motif in other formats | |
| JASPAR format | NFIA.H14INVITRO.0.P.B_jaspar_format.txt |
| MEME format | NFIA.H14INVITRO.0.P.B_meme_format.meme |
| Transfac format | NFIA.H14INVITRO.0.P.B_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 86.0 | 451.0 | 268.0 | 222.0 |
| 02 | 47.0 | 521.0 | 32.0 | 427.0 |
| 03 | 6.0 | 3.0 | 45.0 | 973.0 |
| 04 | 2.0 | 3.0 | 1012.0 | 10.0 |
| 05 | 6.0 | 5.0 | 1005.0 | 11.0 |
| 06 | 85.0 | 892.0 | 34.0 | 16.0 |
| 07 | 571.0 | 116.0 | 31.0 | 309.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.084 | 0.439 | 0.261 | 0.216 |
| 02 | 0.046 | 0.507 | 0.031 | 0.416 |
| 03 | 0.006 | 0.003 | 0.044 | 0.947 |
| 04 | 0.002 | 0.003 | 0.985 | 0.01 |
| 05 | 0.006 | 0.005 | 0.979 | 0.011 |
| 06 | 0.083 | 0.869 | 0.033 | 0.016 |
| 07 | 0.556 | 0.113 | 0.03 | 0.301 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.081 | 0.56 | 0.043 | -0.144 |
| 02 | -1.668 | 0.704 | -2.036 | 0.506 |
| 03 | -3.509 | -4.0 | -1.71 | 1.327 |
| 04 | -4.237 | -4.0 | 1.367 | -3.092 |
| 05 | -3.509 | -3.648 | 1.36 | -3.011 |
| 06 | -1.092 | 1.241 | -1.979 | -2.679 |
| 07 | 0.796 | -0.786 | -2.066 | 0.184 |
| P-value | Threshold |
|---|---|
| 0.001 | 5.19926 |
| 0.0005 | 6.15266 |
| 0.0001 | 7.02259 |