| Motif | MSD1.H14RSNP.0.PSGIB.D |
| Gene (human) | MSANTD1 (GeneCards) |
| Gene synonyms (human) | C4orf44 |
| Gene (mouse) | Msantd1 |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | MSD1.H14RSNP.0.PSGIB.D |
| Gene (human) | MSANTD1 (GeneCards) |
| Gene synonyms (human) | C4orf44 |
| Gene (mouse) | Msantd1 |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 10 |
| Consensus | vMWCTTAASh |
| GC content | 40.71% |
| Information content (bits; total / per base) | 10.784 / 1.078 |
| Data sources | ChIP-Seq + HT-SELEX + Genomic HT-SELEX + SMiLe-Seq + PBM |
| Aligned words | 3936 |
| Previous names |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|
| Overall | 2 (2) | 0.867 | 0.868 | 0.782 | 0.79 | 0.736 | 0.739 | 115.195 | 121.77 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| overall, 3 experiments | median | 1.0 | 1.0 | 0.999 | 0.998 | 0.835 | 0.863 |
| best | 1.0 | 1.0 | 0.999 | 0.999 | 0.894 | 0.911 | |
| Lysate, 1 experiments | median | 1.0 | 1.0 | 0.999 | 0.998 | 0.835 | 0.863 |
| best | 1.0 | 1.0 | 0.999 | 0.998 | 0.835 | 0.863 | |
| IVT, 1 experiments | median | 0.999 | 0.999 | 0.968 | 0.969 | 0.778 | 0.811 |
| best | 0.999 | 0.999 | 0.968 | 0.969 | 0.778 | 0.811 | |
| GFPIVT, 1 experiments | median | 1.0 | 1.0 | 0.999 | 0.999 | 0.894 | 0.911 |
| best | 1.0 | 1.0 | 0.999 | 0.999 | 0.894 | 0.911 | |
| Genomic HT-SELEX benchmarking | Centrality | pseudo-auROC | auROC | auPR | |
|---|---|---|---|---|---|
| overall, 2 experiments | median | 269.212 | 0.928 | 0.961 | 0.956 |
| best | 722.319 | 0.993 | 0.996 | 0.996 | |
| Lysate, 1 experiments | median | 303.538 | 0.921 | 0.948 | 0.946 |
| best | 722.319 | 0.935 | 0.974 | 0.965 | |
| IVT, 1 experiments | median | 234.886 | 0.993 | 0.996 | 0.996 |
| best | 234.886 | 0.993 | 0.996 | 0.996 | |
| SMiLE-Seq benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Overall, 1 experiments | median | 0.998 | 0.998 | 0.975 | 0.972 | 0.802 | 0.828 |
| best | 0.998 | 0.998 | 0.975 | 0.972 | 0.802 | 0.828 | |
| PBM benchmarking | auROC, QNZS | auPR, QNZS | auROC, SD | auPR, SD | |
|---|---|---|---|---|---|
| Overall, 4 experiments | median | 0.67 | 0.119 | 0.609 | 0.064 |
| best | 0.782 | 0.181 | 0.633 | 0.095 | |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Tryptophan cluster factors {3.5} (TFClass) |
| TF family | Myb/SANT domain {3.5.1} (TFClass) |
| TF subfamily | Other Myb-like {3.5.1.0} (TFClass) |
| TFClass ID | TFClass: 3.5.1.0.1 |
| HGNC | HGNC:33741 |
| MGI | MGI:2684990 |
| EntrezGene (human) | GeneID:345222 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:403174 (SSTAR profile) |
| UniProt ID (human) | MSD1_HUMAN |
| UniProt ID (mouse) | MSD1_MOUSE |
| UniProt AC (human) | Q6ZTZ1 (TFClass) |
| UniProt AC (mouse) | Q8BIL2 (TFClass) |
| GRECO-DB-TF | no |
| ChIP-Seq | 2 human, 0 mouse |
| HT-SELEX | 3 overall: 1 Lysate, 1 IVT, 1 GFPIVT |
| Genomic HT-SELEX | 2 overall: 1 Lysate, 1 IVT, 0 GFPIVT |
| SMiLE-Seq | 1 |
| PBM | 4 |
| PCM | MSD1.H14RSNP.0.PSGIB.D.pcm |
| PWM | MSD1.H14RSNP.0.PSGIB.D.pwm |
| PFM | MSD1.H14RSNP.0.PSGIB.D.pfm |
| Threshold to P-value map | MSD1.H14RSNP.0.PSGIB.D.thr |
| Motif in other formats | |
| JASPAR format | MSD1.H14RSNP.0.PSGIB.D_jaspar_format.txt |
| MEME format | MSD1.H14RSNP.0.PSGIB.D_meme_format.meme |
| Transfac format | MSD1.H14RSNP.0.PSGIB.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 702.0 | 1239.0 | 1397.0 | 598.0 |
| 02 | 567.0 | 2509.0 | 547.0 | 313.0 |
| 03 | 2989.0 | 190.0 | 276.0 | 481.0 |
| 04 | 0.0 | 3936.0 | 0.0 | 0.0 |
| 05 | 114.0 | 94.0 | 87.0 | 3641.0 |
| 06 | 0.0 | 0.0 | 0.0 | 3936.0 |
| 07 | 3750.0 | 108.0 | 77.0 | 1.0 |
| 08 | 3546.0 | 221.0 | 167.0 | 2.0 |
| 09 | 384.25 | 533.25 | 2747.25 | 271.25 |
| 10 | 771.0 | 1354.0 | 539.0 | 1272.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.178 | 0.315 | 0.355 | 0.152 |
| 02 | 0.144 | 0.637 | 0.139 | 0.08 |
| 03 | 0.759 | 0.048 | 0.07 | 0.122 |
| 04 | 0.0 | 1.0 | 0.0 | 0.0 |
| 05 | 0.029 | 0.024 | 0.022 | 0.925 |
| 06 | 0.0 | 0.0 | 0.0 | 1.0 |
| 07 | 0.953 | 0.027 | 0.02 | 0.0 |
| 08 | 0.901 | 0.056 | 0.042 | 0.001 |
| 09 | 0.098 | 0.135 | 0.698 | 0.069 |
| 10 | 0.196 | 0.344 | 0.137 | 0.323 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.337 | 0.23 | 0.35 | -0.497 |
| 02 | -0.55 | 0.935 | -0.586 | -1.141 |
| 03 | 1.11 | -1.636 | -1.266 | -0.714 |
| 04 | -6.166 | 1.385 | -6.166 | -6.166 |
| 05 | -2.14 | -2.329 | -2.404 | 1.307 |
| 06 | -6.166 | -6.166 | -6.166 | 1.385 |
| 07 | 1.336 | -2.193 | -2.523 | -5.772 |
| 08 | 1.28 | -1.486 | -1.763 | -5.49 |
| 09 | -0.937 | -0.611 | 1.025 | -1.283 |
| 10 | -0.243 | 0.319 | -0.6 | 0.256 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.5725 |
| 0.0005 | 5.557385 |
| 0.0001 | 7.49924 |