| Motif | MSD1.H14INVIVO.0.PSGIB.A |
| Gene (human) | MSANTD1 (GeneCards) |
| Gene synonyms (human) | C4orf44 |
| Gene (mouse) | Msantd1 |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | A |
| Motif | MSD1.H14INVIVO.0.PSGIB.A |
| Gene (human) | MSANTD1 (GeneCards) |
| Gene synonyms (human) | C4orf44 |
| Gene (mouse) | Msantd1 |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | A |
| Motif length | 10 |
| Consensus | bRCTTAARdb |
| GC content | 31.9% |
| Information content (bits; total / per base) | 10.947 / 1.095 |
| Data sources | ChIP-Seq + HT-SELEX + Genomic HT-SELEX + SMiLe-Seq + PBM |
| Aligned words | 1000 |
| Previous names |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|
| Overall | 2 (2) | 0.877 | 0.879 | 0.785 | 0.788 | 0.757 | 0.765 | 146.406 | 167.638 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| overall, 3 experiments | median | 1.0 | 0.999 | 0.998 | 0.998 | 0.809 | 0.849 |
| best | 1.0 | 1.0 | 0.999 | 0.998 | 0.873 | 0.898 | |
| Lysate, 1 experiments | median | 1.0 | 1.0 | 0.998 | 0.998 | 0.809 | 0.849 |
| best | 1.0 | 1.0 | 0.998 | 0.998 | 0.809 | 0.849 | |
| IVT, 1 experiments | median | 0.998 | 0.996 | 0.965 | 0.965 | 0.769 | 0.804 |
| best | 0.998 | 0.996 | 0.965 | 0.965 | 0.769 | 0.804 | |
| GFPIVT, 1 experiments | median | 1.0 | 0.999 | 0.999 | 0.998 | 0.873 | 0.898 |
| best | 1.0 | 0.999 | 0.999 | 0.998 | 0.873 | 0.898 | |
| Genomic HT-SELEX benchmarking | Centrality | pseudo-auROC | auROC | auPR | |
|---|---|---|---|---|---|
| overall, 2 experiments | median | 264.494 | 0.922 | 0.952 | 0.943 |
| best | 708.229 | 0.981 | 0.988 | 0.974 | |
| Lysate, 1 experiments | median | 298.31 | 0.913 | 0.936 | 0.934 |
| best | 708.229 | 0.931 | 0.968 | 0.951 | |
| IVT, 1 experiments | median | 230.678 | 0.981 | 0.988 | 0.974 |
| best | 230.678 | 0.981 | 0.988 | 0.974 | |
| SMiLE-Seq benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Overall, 1 experiments | median | 0.994 | 0.99 | 0.97 | 0.965 | 0.763 | 0.803 |
| best | 0.994 | 0.99 | 0.97 | 0.965 | 0.763 | 0.803 | |
| PBM benchmarking | auROC, QNZS | auPR, QNZS | auROC, SD | auPR, SD | |
|---|---|---|---|---|---|
| Overall, 4 experiments | median | 0.714 | 0.067 | 0.668 | 0.035 |
| best | 0.856 | 0.111 | 0.695 | 0.045 | |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Tryptophan cluster factors {3.5} (TFClass) |
| TF family | Myb/SANT domain {3.5.1} (TFClass) |
| TF subfamily | Other Myb-like {3.5.1.0} (TFClass) |
| TFClass ID | TFClass: 3.5.1.0.1 |
| HGNC | HGNC:33741 |
| MGI | MGI:2684990 |
| EntrezGene (human) | GeneID:345222 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:403174 (SSTAR profile) |
| UniProt ID (human) | MSD1_HUMAN |
| UniProt ID (mouse) | MSD1_MOUSE |
| UniProt AC (human) | Q6ZTZ1 (TFClass) |
| UniProt AC (mouse) | Q8BIL2 (TFClass) |
| GRECO-DB-TF | no |
| ChIP-Seq | 2 human, 0 mouse |
| HT-SELEX | 3 overall: 1 Lysate, 1 IVT, 1 GFPIVT |
| Genomic HT-SELEX | 2 overall: 1 Lysate, 1 IVT, 0 GFPIVT |
| SMiLE-Seq | 1 |
| PBM | 4 |
| PCM | MSD1.H14INVIVO.0.PSGIB.A.pcm |
| PWM | MSD1.H14INVIVO.0.PSGIB.A.pwm |
| PFM | MSD1.H14INVIVO.0.PSGIB.A.pfm |
| Threshold to P-value map | MSD1.H14INVIVO.0.PSGIB.A.thr |
| Motif in other formats | |
| JASPAR format | MSD1.H14INVIVO.0.PSGIB.A_jaspar_format.txt |
| MEME format | MSD1.H14INVIVO.0.PSGIB.A_meme_format.meme |
| Transfac format | MSD1.H14INVIVO.0.PSGIB.A_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 157.0 | 392.0 | 194.0 | 257.0 |
| 02 | 755.0 | 39.0 | 142.0 | 64.0 |
| 03 | 23.0 | 937.0 | 18.0 | 22.0 |
| 04 | 2.0 | 6.0 | 0.0 | 992.0 |
| 05 | 6.0 | 8.0 | 8.0 | 978.0 |
| 06 | 970.0 | 8.0 | 13.0 | 9.0 |
| 07 | 970.0 | 3.0 | 27.0 | 0.0 |
| 08 | 344.0 | 73.0 | 533.0 | 50.0 |
| 09 | 555.0 | 95.0 | 99.0 | 251.0 |
| 10 | 64.0 | 154.0 | 441.0 | 341.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.157 | 0.392 | 0.194 | 0.257 |
| 02 | 0.755 | 0.039 | 0.142 | 0.064 |
| 03 | 0.023 | 0.937 | 0.018 | 0.022 |
| 04 | 0.002 | 0.006 | 0.0 | 0.992 |
| 05 | 0.006 | 0.008 | 0.008 | 0.978 |
| 06 | 0.97 | 0.008 | 0.013 | 0.009 |
| 07 | 0.97 | 0.003 | 0.027 | 0.0 |
| 08 | 0.344 | 0.073 | 0.533 | 0.05 |
| 09 | 0.555 | 0.095 | 0.099 | 0.251 |
| 10 | 0.064 | 0.154 | 0.441 | 0.341 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.461 | 0.447 | -0.252 | 0.027 |
| 02 | 1.101 | -1.821 | -0.56 | -1.343 |
| 03 | -2.32 | 1.316 | -2.546 | -2.362 |
| 04 | -4.213 | -3.484 | -4.982 | 1.373 |
| 05 | -3.484 | -3.253 | -3.253 | 1.359 |
| 06 | 1.351 | -3.253 | -2.839 | -3.156 |
| 07 | 1.351 | -3.975 | -2.171 | -4.982 |
| 08 | 0.317 | -1.215 | 0.753 | -1.582 |
| 09 | 0.794 | -0.956 | -0.916 | 0.004 |
| 10 | -1.343 | -0.48 | 0.565 | 0.309 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.398635 |
| 0.0005 | 5.421955 |
| 0.0001 | 7.54818 |