| Motif | MEIS1.H14INVITRO.1.PS.A |
| Gene (human) | MEIS1 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Meis1 |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 1 |
| Quality | A |
| Motif | MEIS1.H14INVITRO.1.PS.A |
| Gene (human) | MEIS1 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Meis1 |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 1 |
| Quality | A |
| Motif length | 10 |
| Consensus | nhTGACARvn |
| GC content | 48.47% |
| Information content (bits; total / per base) | 10.543 / 1.054 |
| Data sources | ChIP-Seq + HT-SELEX |
| Aligned words | 2378 |
| Previous names | MEIS1.H12INVITRO.1.PS.A |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 3 (16) | 0.681 | 0.725 | 0.534 | 0.574 | 0.594 | 0.633 | 1.35 | 1.431 | 41.001 | 93.921 |
| Mouse | 18 (114) | 0.714 | 0.813 | 0.565 | 0.698 | 0.654 | 0.75 | 1.556 | 2.021 | 75.746 | 220.886 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Non-Methyl HT-SELEX, 1 experiments | median | 0.943 | 0.906 | 0.921 | 0.879 | 0.866 | 0.826 |
| best | 0.943 | 0.906 | 0.921 | 0.879 | 0.866 | 0.826 | |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Homeo domain factors {3.1} (TFClass) |
| TF family | TALE-type HD {3.1.4} (TFClass) |
| TF subfamily | MEIS {3.1.4.2} (TFClass) |
| TFClass ID | TFClass: 3.1.4.2.1 |
| HGNC | HGNC:7000 |
| MGI | MGI:104717 |
| EntrezGene (human) | GeneID:4211 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:17268 (SSTAR profile) |
| UniProt ID (human) | MEIS1_HUMAN |
| UniProt ID (mouse) | MEIS1_MOUSE |
| UniProt AC (human) | O00470 (TFClass) |
| UniProt AC (mouse) | Q60954 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 3 human, 18 mouse |
| HT-SELEX | 1 |
| Methyl-HT-SELEX | 0 |
| Genomic HT-SELEX | 0 overall: 0 Lysate, 0 IVT, 0 GFPIVT |
| SMiLE-Seq | 0 |
| PBM | 0 |
| PCM | MEIS1.H14INVITRO.1.PS.A.pcm |
| PWM | MEIS1.H14INVITRO.1.PS.A.pwm |
| PFM | MEIS1.H14INVITRO.1.PS.A.pfm |
| Threshold to P-value map | MEIS1.H14INVITRO.1.PS.A.thr |
| Motif in other formats | |
| JASPAR format | MEIS1.H14INVITRO.1.PS.A_jaspar_format.txt |
| MEME format | MEIS1.H14INVITRO.1.PS.A_meme_format.meme |
| Transfac format | MEIS1.H14INVITRO.1.PS.A_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 544.25 | 761.25 | 500.25 | 572.25 |
| 02 | 598.25 | 722.25 | 206.25 | 851.25 |
| 03 | 67.0 | 5.0 | 8.0 | 2298.0 |
| 04 | 0.0 | 0.0 | 2378.0 | 0.0 |
| 05 | 2378.0 | 0.0 | 0.0 | 0.0 |
| 06 | 0.0 | 2378.0 | 0.0 | 0.0 |
| 07 | 2371.0 | 0.0 | 7.0 | 0.0 |
| 08 | 405.0 | 164.0 | 1414.0 | 395.0 |
| 09 | 337.0 | 778.0 | 990.0 | 273.0 |
| 10 | 419.25 | 715.25 | 499.25 | 744.25 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.229 | 0.32 | 0.21 | 0.241 |
| 02 | 0.252 | 0.304 | 0.087 | 0.358 |
| 03 | 0.028 | 0.002 | 0.003 | 0.966 |
| 04 | 0.0 | 0.0 | 1.0 | 0.0 |
| 05 | 1.0 | 0.0 | 0.0 | 0.0 |
| 06 | 0.0 | 1.0 | 0.0 | 0.0 |
| 07 | 0.997 | 0.0 | 0.003 | 0.0 |
| 08 | 0.17 | 0.069 | 0.595 | 0.166 |
| 09 | 0.142 | 0.327 | 0.416 | 0.115 |
| 10 | 0.176 | 0.301 | 0.21 | 0.313 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.088 | 0.247 | -0.172 | -0.038 |
| 02 | 0.006 | 0.194 | -1.053 | 0.358 |
| 03 | -2.158 | -4.453 | -4.094 | 1.35 |
| 04 | -5.726 | -5.726 | 1.384 | -5.726 |
| 05 | 1.384 | -5.726 | -5.726 | -5.726 |
| 06 | -5.726 | 1.384 | -5.726 | -5.726 |
| 07 | 1.381 | -5.726 | -4.2 | -5.726 |
| 08 | -0.382 | -1.279 | 0.865 | -0.407 |
| 09 | -0.565 | 0.268 | 0.509 | -0.774 |
| 10 | -0.348 | 0.184 | -0.174 | 0.224 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.482635 |
| 0.0005 | 6.186265 |
| 0.0001 | 7.67648 |