MotifMAFF.H14RSNP.0.PSM.A
Gene (human)MAFF
(GeneCards)
Gene synonyms (human)
Gene (mouse)Maff
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
A
Motif length22
ConsensusdhhbWGCYKRSTCAGCWnhYYh
GC content44.31%
Information content (bits; total / per base)16.203 / 0.736
Data sourcesChIP-Seq + HT-SELEX + Methyl-HT-SELEX
Aligned words979
Previous namesMAFF.H12RSNP.0.PSM.A

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 2 (14) 0.947 0.961 0.936 0.953 0.944 0.961 6.335 6.909 817.887 1000.796
Mouse 7 (48) 0.926 0.953 0.909 0.939 0.923 0.947 6.21 7.411 313.514 672.824

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 4 experiments median 0.978 0.973 0.898 0.896 0.779 0.791
best 0.999 0.999 0.996 0.995 0.945 0.942
Methyl HT-SELEX, 2 experiments median 0.978 0.973 0.898 0.896 0.779 0.791
best 0.998 0.998 0.985 0.982 0.885 0.888
Non-Methyl HT-SELEX, 2 experiments median 0.775 0.776 0.761 0.762 0.73 0.73
best 0.999 0.999 0.996 0.995 0.945 0.942

rSNP benchmarking, SNP-SELEX auROC auPRC Pearson r Kendall tau
batch 2 0.757 0.682 0.782 0.588
TF superclassBasic domains {1} (TFClass)
TF classBasic leucine zipper factors (bZIP) {1.1} (TFClass)
TF familyMaf-related {1.1.3} (TFClass)
TF subfamilySmall MAF {1.1.3.2} (TFClass)
TFClass IDTFClass: 1.1.3.2.1
HGNCHGNC:6780
MGIMGI:96910
EntrezGene (human)GeneID:23764
(SSTAR profile)
EntrezGene (mouse)GeneID:17133
(SSTAR profile)
UniProt ID (human)MAFF_HUMAN
UniProt ID (mouse)MAFF_MOUSE
UniProt AC (human)Q9ULX9
(TFClass)
UniProt AC (mouse)O54791
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 2 human, 7 mouse
HT-SELEX 2
Methyl-HT-SELEX 2
Genomic HT-SELEX 0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
SMiLE-Seq 0
PBM 0
PCM
ACGT
01309.0130.0154.0386.0
02320.0119.081.0459.0
03236.0159.0108.0476.0
04116.0332.0145.0386.0
05100.073.074.0732.0
0626.081.0845.027.0
0752.0831.019.077.0
0878.0130.017.0754.0
09102.058.0675.0144.0
10742.048.095.094.0
1153.0435.0441.050.0
1234.036.016.0893.0
1358.0850.031.040.0
14852.08.059.060.0
1512.027.0828.0112.0
165.0915.030.029.0
17716.025.082.0156.0
18175.0256.0183.0365.0
19195.0126.089.0569.0
20119.0178.045.0637.0
2181.0262.065.0571.0
22145.0267.0116.0451.0
PFM
ACGT
010.3160.1330.1570.394
020.3270.1220.0830.469
030.2410.1620.110.486
040.1180.3390.1480.394
050.1020.0750.0760.748
060.0270.0830.8630.028
070.0530.8490.0190.079
080.080.1330.0170.77
090.1040.0590.6890.147
100.7580.0490.0970.096
110.0540.4440.450.051
120.0350.0370.0160.912
130.0590.8680.0320.041
140.870.0080.060.061
150.0120.0280.8460.114
160.0050.9350.0310.03
170.7310.0260.0840.159
180.1790.2610.1870.373
190.1990.1290.0910.581
200.1220.1820.0460.651
210.0830.2680.0660.583
220.1480.2730.1180.461
PWM
ACGT
010.232-0.627-0.4590.453
020.266-0.714-1.0920.626
03-0.036-0.428-0.8090.662
04-0.7390.303-0.5190.453
05-0.885-1.193-1.181.091
06-2.185-1.0921.234-2.15
07-1.5231.217-2.476-1.141
08-1.129-0.627-2.5781.12
09-0.866-1.4181.01-0.526
101.104-1.601-0.935-0.946
11-1.5050.5720.586-1.561
12-1.931-1.877-2.6321.289
13-1.4181.24-2.019-1.776
141.242-3.233-1.401-1.385
15-2.888-2.151.214-0.773
16-3.6021.314-2.05-2.082
171.069-2.222-1.08-0.446
18-0.3330.045-0.2880.397
19-0.225-0.657-0.9990.84
20-0.714-0.316-1.6630.952
21-1.0920.068-1.3070.843
22-0.5190.086-0.7390.608
Standard thresholds
P-value Threshold
0.001 3.01856
0.0005 4.08341
0.0001 6.35206