MotifKLF13.H14RSNP.1.P.C
Gene (human)KLF13
(GeneCards)
Gene synonyms (human)BTEB3, NSLP1
Gene (mouse)Klf13
Gene synonyms (mouse)Bteb3, Fklf2
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
C
Motif length20
ConsensusdGKGGGMGKRKvnvvvdvdv
GC content70.11%
Information content (bits; total / per base)12.52 / 0.626
Data sourcesChIP-Seq
Aligned words984
Previous namesKLF13.H12RSNP.1.P.C

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 2 (13) 0.732 0.742 0.557 0.575 0.808 0.827 3.183 3.409 14.921 62.137

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 6 experiments median 0.874 0.803 0.854 0.784 0.816 0.753
best 0.928 0.879 0.913 0.861 0.882 0.831
Methyl HT-SELEX, 2 experiments median 0.874 0.803 0.854 0.784 0.816 0.753
best 0.884 0.817 0.866 0.799 0.832 0.769
Non-Methyl HT-SELEX, 4 experiments median 0.779 0.736 0.718 0.694 0.679 0.661
best 0.928 0.879 0.913 0.861 0.882 0.831

rSNP benchmarking, SNP-SELEX auROC auPRC Pearson r Kendall tau
batch 1 0.932 0.059 0.928 0.534
batch 2 0.813 0.3 0.702 0.49
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyThree-zinc finger Kruppel-related {2.3.1} (TFClass)
TF subfamilyKr-like {2.3.1.2} (TFClass)
TFClass IDTFClass: 2.3.1.2.13
HGNCHGNC:13672
MGIMGI:1354948
EntrezGene (human)GeneID:51621
(SSTAR profile)
EntrezGene (mouse)GeneID:50794
(SSTAR profile)
UniProt ID (human)KLF13_HUMAN
UniProt ID (mouse)KLF13_MOUSE
UniProt AC (human)Q9Y2Y9
(TFClass)
UniProt AC (mouse)Q9JJZ6
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 2 human, 0 mouse
HT-SELEX 4
Methyl-HT-SELEX 2
Genomic HT-SELEX 0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
SMiLE-Seq 0
PBM 0
PCM
ACGT
01447.091.0267.0179.0
02216.014.0739.015.0
03110.014.0588.0272.0
04154.026.0780.024.0
0541.012.0858.073.0
0626.013.0933.012.0
07186.0642.02.0154.0
0834.010.0899.041.0
0911.010.0653.0310.0
10146.031.0748.059.0
11149.034.0622.0179.0
12135.0506.0281.062.0
13190.0305.0182.0307.0
14223.0150.0473.0138.0
15174.0173.0469.0168.0
16159.0133.0587.0105.0
17201.0128.0469.0186.0
18186.0162.0524.0112.0
19185.0114.0443.0242.0
20150.0125.0587.0122.0
PFM
ACGT
010.4540.0920.2710.182
020.220.0140.7510.015
030.1120.0140.5980.276
040.1570.0260.7930.024
050.0420.0120.8720.074
060.0260.0130.9480.012
070.1890.6520.0020.157
080.0350.010.9140.042
090.0110.010.6640.315
100.1480.0320.760.06
110.1510.0350.6320.182
120.1370.5140.2860.063
130.1930.310.1850.312
140.2270.1520.4810.14
150.1770.1760.4770.171
160.1620.1350.5970.107
170.2040.130.4770.189
180.1890.1650.5330.114
190.1880.1160.450.246
200.1520.1270.5970.124
PWM
ACGT
010.594-0.9830.081-0.315
02-0.129-2.7571.095-2.696
03-0.796-2.7570.8670.1
04-0.464-2.191.149-2.265
05-1.758-2.8931.244-1.199
06-2.19-2.8231.328-2.893
07-0.2770.955-4.198-0.464
08-1.937-3.0511.291-1.758
09-2.969-3.0510.9720.23
10-0.517-2.0241.107-1.406
11-0.497-1.9370.923-0.315
12-0.5940.7180.132-1.358
13-0.2560.214-0.2990.22
14-0.097-0.490.65-0.573
15-0.343-0.3490.642-0.378
16-0.433-0.6090.866-0.842
17-0.2-0.6470.642-0.277
18-0.277-0.4140.752-0.779
19-0.283-0.7610.585-0.016
20-0.49-0.670.866-0.694
Standard thresholds
P-value Threshold
0.001 4.11381
0.0005 5.05911
0.0001 7.03106