KAISO.H14INVIVO.1.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	KAISO.H14INVIVO.1.P.B
Gene (human)	ZBTB33 (GeneCards)
Gene synonyms (human)	KAISO, ZNF348
Gene (mouse)	Zbtb33
Gene synonyms (mouse)	Kaiso
LOGO
LOGO (reverse complement)
Motif subtype	1
Quality	B

Motif length	15
Consensus	bvRvYMTCGCGAGAd
GC content	57.38%
Information content (bits; total / per base)	16.351 / 1.09
Data sources	ChIP-Seq
Aligned words	178
Previous names	KAISO.H12INVIVO.1.P.B

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	15 (99)	0.849	0.965	0.823	0.967	0.768	0.958	4.107	7.068	244.208	460.959

rSNP benchmarking, ADASTRA	odds-ratio	-log-Fisher's P	Pearson r	Kendall tau
#	2.638	5.05	0.113	0.073

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Other with up to three adjacent zinc fingers {2.3.2} (TFClass)
TF subfamily	BTB-POZ {2.3.2.1} (TFClass)
TFClass ID	TFClass: 2.3.2.1.12
HGNC	HGNC:16682
MGI	MGI:1927290
EntrezGene (human)	GeneID:10009 (SSTAR profile)
EntrezGene (mouse)	GeneID:56805 (SSTAR profile)
UniProt ID (human)	KAISO_HUMAN
UniProt ID (mouse)	KAISO_MOUSE
UniProt AC (human)	Q86T24 (TFClass)
UniProt AC (mouse)	Q8BN78 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	15 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0
Genomic HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	KAISO.H14INVIVO.1.P.B.pcm
PWM	KAISO.H14INVIVO.1.P.B.pwm
PFM	KAISO.H14INVIVO.1.P.B.pfm
Threshold to P-value map	KAISO.H14INVIVO.1.P.B.thr
Motif in other formats
JASPAR format	KAISO.H14INVIVO.1.P.B_jaspar_format.txt
MEME format	KAISO.H14INVIVO.1.P.B_meme_format.meme
Transfac format	KAISO.H14INVIVO.1.P.B_transfac_format.txt
Homer format	KAISO.H14INVIVO.1.P.B_homer_format_0.001.txt KAISO.H14INVIVO.1.P.B_homer_format_0.0005.txt KAISO.H14INVIVO.1.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	15.0	88.0	59.0	16.0
02	86.0	22.0	56.0	14.0
03	106.0	17.0	53.0	2.0
04	69.0	52.0	35.0	22.0
05	7.0	30.0	7.0	134.0
06	48.0	121.0	9.0	0.0
07	3.0	20.0	5.0	150.0
08	1.0	177.0	0.0	0.0
09	3.0	0.0	175.0	0.0
10	0.0	175.0	0.0	3.0
11	2.0	2.0	174.0	0.0
12	167.0	3.0	7.0	1.0
13	6.0	4.0	156.0	12.0
14	160.0	2.0	14.0	2.0
15	76.0	25.0	44.0	33.0

PFM

	A	C	G	T
01	0.084	0.494	0.331	0.09
02	0.483	0.124	0.315	0.079
03	0.596	0.096	0.298	0.011
04	0.388	0.292	0.197	0.124
05	0.039	0.169	0.039	0.753
06	0.27	0.68	0.051	0.0
07	0.017	0.112	0.028	0.843
08	0.006	0.994	0.0	0.0
09	0.017	0.0	0.983	0.0
10	0.0	0.983	0.0	0.017
11	0.011	0.011	0.978	0.0
12	0.938	0.017	0.039	0.006
13	0.034	0.022	0.876	0.067
14	0.899	0.011	0.079	0.011
15	0.427	0.14	0.247	0.185

PWM

	A	C	G	T
01	-1.033	0.668	0.275	-0.974
02	0.645	-0.676	0.224	-1.097
03	0.851	-0.918	0.17	-2.632
04	0.429	0.152	-0.232	-0.676
05	-1.708	-0.381	-1.708	1.083
06	0.074	0.982	-1.492	-3.565
07	-2.367	-0.766	-1.984	1.195
08	-2.993	1.359	-3.565	-3.565
09	-2.367	-3.565	1.348	-3.565
10	-3.565	1.348	-3.565	-2.367
11	-2.632	-2.632	1.342	-3.565
12	1.302	-2.367	-1.708	-2.993
13	-1.837	-2.157	1.234	-1.237
14	1.259	-2.632	-1.097	-2.632
15	0.523	-0.555	-0.011	-0.289

Standard thresholds

P-value	Threshold
0.001	2.81546
0.0005	3.98816
0.0001	6.44666