JUNB.H14INVIVO.0.PM.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	JUNB.H14INVIVO.0.PM.A
Gene (human)	JUNB (GeneCards)
Gene synonyms (human)
Gene (mouse)	Junb
Gene synonyms (mouse)	Jun-b
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	10
Consensus	vTGAGTCAbn
GC content	42.88%
Information content (bits; total / per base)	12.02 / 1.202
Data sources	ChIP-Seq + Methyl-HT-SELEX
Aligned words	1002
Previous names	JUNB.H12INVIVO.0.PM.A

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	22 (137)	0.922	0.986	0.867	0.974	0.919	0.979	3.676	4.676	178.194	548.337
Mouse	25 (148)	0.899	0.969	0.839	0.937	0.878	0.961	3.293	4.135	187.234	388.276

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 2 experiments	median	0.739	0.723	0.636	0.633	0.581	0.584
Overall, 2 experiments	best	0.849	0.836	0.702	0.703	0.616	0.627
Methyl HT-SELEX, 1 experiments	median	0.849	0.836	0.702	0.703	0.616	0.627
Methyl HT-SELEX, 1 experiments	best	0.849	0.836	0.702	0.703	0.616	0.627
Non-Methyl HT-SELEX, 1 experiments	median	0.63	0.609	0.57	0.564	0.545	0.542
Non-Methyl HT-SELEX, 1 experiments	best	0.63	0.609	0.57	0.564	0.545	0.542

rSNP benchmarking, SNP-SELEX	auROC	auPRC	Pearson r	Kendall tau
batch 2	0.538	0.087	0.044	0.078

TF superclass	Basic domains {1} (TFClass)
TF class	Basic leucine zipper factors (bZIP) {1.1} (TFClass)
TF family	Jun-related {1.1.1} (TFClass)
TF subfamily	Jun {1.1.1.1} (TFClass)
TFClass ID	TFClass: 1.1.1.1.2
HGNC	HGNC:6205
MGI	MGI:96647
EntrezGene (human)	GeneID:3726 (SSTAR profile)
EntrezGene (mouse)	GeneID:16477 (SSTAR profile)
UniProt ID (human)	JUNB_HUMAN
UniProt ID (mouse)	JUNB_MOUSE
UniProt AC (human)	P17275 (TFClass)
UniProt AC (mouse)	P09450 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	22 human, 25 mouse
HT-SELEX	1
Methyl-HT-SELEX	1
Genomic HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	JUNB.H14INVIVO.0.PM.A.pcm
PWM	JUNB.H14INVIVO.0.PM.A.pwm
PFM	JUNB.H14INVIVO.0.PM.A.pfm
Threshold to P-value map	JUNB.H14INVIVO.0.PM.A.thr
Motif in other formats
JASPAR format	JUNB.H14INVIVO.0.PM.A_jaspar_format.txt
MEME format	JUNB.H14INVIVO.0.PM.A_meme_format.meme
Transfac format	JUNB.H14INVIVO.0.PM.A_transfac_format.txt
Homer format	JUNB.H14INVIVO.0.PM.A_homer_format_0.001.txt JUNB.H14INVIVO.0.PM.A_homer_format_0.0005.txt JUNB.H14INVIVO.0.PM.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	440.0	239.0	270.0	53.0
02	11.0	3.0	10.0	978.0
03	9.0	21.0	887.0	85.0
04	948.0	23.0	11.0	20.0
05	174.0	0.0	828.0	0.0
06	16.0	11.0	13.0	962.0
07	41.0	951.0	5.0	5.0
08	991.0	2.0	7.0	2.0
09	42.0	360.0	165.0	435.0
10	266.0	351.0	140.0	245.0

PFM

	A	C	G	T
01	0.439	0.239	0.269	0.053
02	0.011	0.003	0.01	0.976
03	0.009	0.021	0.885	0.085
04	0.946	0.023	0.011	0.02
05	0.174	0.0	0.826	0.0
06	0.016	0.011	0.013	0.96
07	0.041	0.949	0.005	0.005
08	0.989	0.002	0.007	0.002
09	0.042	0.359	0.165	0.434
10	0.265	0.35	0.14	0.245

PWM

	A	C	G	T
01	0.56	-0.047	0.074	-1.528
02	-2.987	-3.977	-3.068	1.357
03	-3.158	-2.407	1.259	-1.068
04	1.326	-2.322	-2.987	-2.452
05	-0.361	-4.984	1.191	-4.984
06	-2.655	-2.987	-2.841	1.34
07	-1.775	1.329	-3.624	-3.624
08	1.37	-4.215	-3.364	-4.215
09	-1.752	0.361	-0.414	0.549
10	0.06	0.335	-0.576	-0.022

Standard thresholds

P-value	Threshold
0.001	4.04746
0.0005	5.11332
0.0001	7.278375