FOXP2.H14INVIVO.0.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	FOXP2.H14INVIVO.0.P.B
Gene (human)	FOXP2 (GeneCards)
Gene synonyms (human)	CAGH44, TNRC10
Gene (mouse)	Foxp2
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	B

Motif length	9
Consensus	bbTGTTTWC
GC content	37.37%
Information content (bits; total / per base)	10.261 / 1.14
Data sources	ChIP-Seq
Aligned words	1000
Previous names	FOXP2.H12INVIVO.0.P.B

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (7)	0.647	0.85	0.534	0.776	0.728	0.902	2.538	3.779	63.959	206.456

rSNP benchmarking, SNP-SELEX	auROC	auPRC	Pearson r	Kendall tau
batch 2	0.597	0.325	0.539	0.303

TF superclass	Helix-turn-helix domains {3} (TFClass)
TF class	Fork head/winged helix factors {3.3} (TFClass)
TF family	FOX {3.3.1} (TFClass)
TF subfamily	FOXP {3.3.1.16} (TFClass)
TFClass ID	TFClass: 3.3.1.16.2
HGNC	HGNC:13875
MGI	MGI:2148705
EntrezGene (human)	GeneID:93986 (SSTAR profile)
EntrezGene (mouse)	GeneID:114142 (SSTAR profile)
UniProt ID (human)	FOXP2_HUMAN
UniProt ID (mouse)	FOXP2_MOUSE
UniProt AC (human)	O15409 (TFClass)
UniProt AC (mouse)	P58463 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0
Genomic HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	FOXP2.H14INVIVO.0.P.B.pcm
PWM	FOXP2.H14INVIVO.0.P.B.pwm
PFM	FOXP2.H14INVIVO.0.P.B.pfm
Threshold to P-value map	FOXP2.H14INVIVO.0.P.B.thr
Motif in other formats
JASPAR format	FOXP2.H14INVIVO.0.P.B_jaspar_format.txt
MEME format	FOXP2.H14INVIVO.0.P.B_meme_format.meme
Transfac format	FOXP2.H14INVIVO.0.P.B_transfac_format.txt
Homer format	FOXP2.H14INVIVO.0.P.B_homer_format_0.001.txt FOXP2.H14INVIVO.0.P.B_homer_format_0.0005.txt FOXP2.H14INVIVO.0.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	104.0	319.0	266.0	311.0
02	71.0	405.0	224.0	300.0
03	8.0	8.0	12.0	972.0
04	39.0	8.0	951.0	2.0
05	8.0	23.0	7.0	962.0
06	4.0	9.0	87.0	900.0
07	0.0	8.0	150.0	842.0
08	796.0	65.0	39.0	100.0
09	6.0	757.0	25.0	212.0

PFM

	A	C	G	T
01	0.104	0.319	0.266	0.311
02	0.071	0.405	0.224	0.3
03	0.008	0.008	0.012	0.972
04	0.039	0.008	0.951	0.002
05	0.008	0.023	0.007	0.962
06	0.004	0.009	0.087	0.9
07	0.0	0.008	0.15	0.842
08	0.796	0.065	0.039	0.1
09	0.006	0.757	0.025	0.212

PWM

	A	C	G	T
01	-0.867	0.242	0.062	0.217
02	-1.242	0.48	-0.109	0.181
03	-3.253	-3.253	-2.909	1.353
04	-1.821	-3.253	1.331	-4.213
05	-3.253	-2.32	-3.362	1.342
06	-3.783	-3.156	-1.043	1.276
07	-4.982	-3.253	-0.506	1.209
08	1.153	-1.328	-1.821	-0.906
09	-3.484	1.103	-2.243	-0.164

Standard thresholds

P-value	Threshold
0.001	4.64797
0.0005	5.5889
0.0001	7.472115