| Motif | FOXP1.H14CORE.0.PS.A |
| Gene (human) | FOXP1 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Foxp1 |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | A |
| Motif | FOXP1.H14CORE.0.PS.A |
| Gene (human) | FOXP1 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Foxp1 |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | A |
| Motif length | 9 |
| Consensus | nTGTTTACh |
| GC content | 32.56% |
| Information content (bits; total / per base) | 11.447 / 1.272 |
| Data sources | ChIP-Seq + HT-SELEX |
| Aligned words | 447 |
| Previous names | FOXP1.H12CORE.0.PS.A |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 11 (71) | 0.683 | 0.903 | 0.592 | 0.828 | 0.712 | 0.92 | 2.172 | 3.409 | 48.538 | 212.699 |
| Mouse | 4 (22) | 0.637 | 0.799 | 0.536 | 0.695 | 0.673 | 0.802 | 2.043 | 2.713 | 22.959 | 195.796 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Non-Methyl HT-SELEX, 1 experiments | median | 0.883 | 0.835 | 0.794 | 0.755 | 0.683 | 0.674 |
| best | 0.883 | 0.835 | 0.794 | 0.755 | 0.683 | 0.674 | |
| rSNP benchmarking, ADASTRA | odds-ratio | -log-Fisher's P | Pearson r | Kendall tau |
|---|---|---|---|---|
| # | 2.984 | 1.682 | 0.11 | 0.15 |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Fork head/winged helix factors {3.3} (TFClass) |
| TF family | FOX {3.3.1} (TFClass) |
| TF subfamily | FOXP {3.3.1.16} (TFClass) |
| TFClass ID | TFClass: 3.3.1.16.1 |
| HGNC | HGNC:3823 |
| MGI | MGI:1914004 |
| EntrezGene (human) | GeneID:27086 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:108655 (SSTAR profile) |
| UniProt ID (human) | FOXP1_HUMAN |
| UniProt ID (mouse) | FOXP1_MOUSE |
| UniProt AC (human) | Q9H334 (TFClass) |
| UniProt AC (mouse) | P58462 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 11 human, 4 mouse |
| HT-SELEX | 1 |
| Methyl-HT-SELEX | 0 |
| Genomic HT-SELEX | 0 overall: 0 Lysate, 0 IVT, 0 GFPIVT |
| SMiLE-Seq | 0 |
| PBM | 0 |
| PCM | FOXP1.H14CORE.0.PS.A.pcm |
| PWM | FOXP1.H14CORE.0.PS.A.pwm |
| PFM | FOXP1.H14CORE.0.PS.A.pfm |
| Threshold to P-value map | FOXP1.H14CORE.0.PS.A.thr |
| Motif in other formats | |
| JASPAR format | FOXP1.H14CORE.0.PS.A_jaspar_format.txt |
| MEME format | FOXP1.H14CORE.0.PS.A_meme_format.meme |
| Transfac format | FOXP1.H14CORE.0.PS.A_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 59.0 | 128.0 | 145.0 | 115.0 |
| 02 | 3.0 | 1.0 | 7.0 | 436.0 |
| 03 | 15.0 | 1.0 | 430.0 | 1.0 |
| 04 | 5.0 | 1.0 | 0.0 | 441.0 |
| 05 | 1.0 | 1.0 | 21.0 | 424.0 |
| 06 | 0.0 | 1.0 | 64.0 | 382.0 |
| 07 | 395.0 | 17.0 | 25.0 | 10.0 |
| 08 | 4.0 | 358.0 | 2.0 | 83.0 |
| 09 | 134.0 | 100.0 | 8.0 | 205.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.132 | 0.286 | 0.324 | 0.257 |
| 02 | 0.007 | 0.002 | 0.016 | 0.975 |
| 03 | 0.034 | 0.002 | 0.962 | 0.002 |
| 04 | 0.011 | 0.002 | 0.0 | 0.987 |
| 05 | 0.002 | 0.002 | 0.047 | 0.949 |
| 06 | 0.0 | 0.002 | 0.143 | 0.855 |
| 07 | 0.884 | 0.038 | 0.056 | 0.022 |
| 08 | 0.009 | 0.801 | 0.004 | 0.186 |
| 09 | 0.3 | 0.224 | 0.018 | 0.459 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.627 | 0.134 | 0.257 | 0.028 |
| 02 | -3.22 | -3.803 | -2.587 | 1.351 |
| 03 | -1.925 | -3.803 | 1.338 | -3.803 |
| 04 | -2.854 | -3.803 | -4.307 | 1.363 |
| 05 | -3.803 | -3.803 | -1.615 | 1.324 |
| 06 | -4.307 | -3.803 | -0.547 | 1.22 |
| 07 | 1.253 | -1.811 | -1.452 | -2.285 |
| 08 | -3.02 | 1.155 | -3.47 | -0.293 |
| 09 | 0.179 | -0.11 | -2.476 | 0.601 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.347515 |
| 0.0005 | 5.25085 |
| 0.0001 | 7.463125 |