| Motif | ETV7.H14RSNP.1.P.C |
| Gene (human) | ETV7 (GeneCards) |
| Gene synonyms (human) | TEL2, TELB, TREF |
| Gene (mouse) | |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 1 |
| Quality | C |
| Motif | ETV7.H14RSNP.1.P.C |
| Gene (human) | ETV7 (GeneCards) |
| Gene synonyms (human) | TEL2, TELB, TREF |
| Gene (mouse) | |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 1 |
| Quality | C |
| Motif length | 7 |
| Consensus | vRGGAAR |
| GC content | 50.36% |
| Information content (bits; total / per base) | 8.712 / 1.245 |
| Data sources | ChIP-Seq |
| Aligned words | 1082 |
| Previous names | ETV7.H12RSNP.1.P.C |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 1 (7) | 0.594 | 0.61 | 0.4 | 0.427 | 0.627 | 0.634 | 1.304 | 1.313 | 1.046 | 1.854 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Overall, 2 experiments | median | 0.898 | 0.875 | 0.844 | 0.81 | 0.78 | 0.763 |
| best | 0.945 | 0.925 | 0.925 | 0.886 | 0.927 | 0.881 | |
| Methyl HT-SELEX, 1 experiments | median | 0.851 | 0.825 | 0.763 | 0.734 | 0.633 | 0.645 |
| best | 0.851 | 0.825 | 0.763 | 0.734 | 0.633 | 0.645 | |
| Non-Methyl HT-SELEX, 1 experiments | median | 0.945 | 0.925 | 0.925 | 0.886 | 0.927 | 0.881 |
| best | 0.945 | 0.925 | 0.925 | 0.886 | 0.927 | 0.881 | |
| rSNP benchmarking, SNP-SELEX | auROC | auPRC | Pearson r | Kendall tau |
|---|---|---|---|---|
| batch 1 | 0.811 | 0.174 | 0.645 | 0.404 |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Tryptophan cluster factors {3.5} (TFClass) |
| TF family | Ets-related {3.5.2} (TFClass) |
| TF subfamily | ETV6-like {3.5.2.6} (TFClass) |
| TFClass ID | TFClass: 3.5.2.6.2 |
| HGNC | HGNC:18160 |
| MGI | |
| EntrezGene (human) | GeneID:51513 (SSTAR profile) |
| EntrezGene (mouse) | |
| UniProt ID (human) | ETV7_HUMAN |
| UniProt ID (mouse) | |
| UniProt AC (human) | Q9Y603 (TFClass) |
| UniProt AC (mouse) | |
| GRECO-DB-TF | yes |
| ChIP-Seq | 1 human, 0 mouse |
| HT-SELEX | 1 |
| Methyl-HT-SELEX | 1 |
| Genomic HT-SELEX | 0 overall: 0 Lysate, 0 IVT, 0 GFPIVT |
| SMiLE-Seq | 0 |
| PBM | 0 |
| PCM | ETV7.H14RSNP.1.P.C.pcm |
| PWM | ETV7.H14RSNP.1.P.C.pwm |
| PFM | ETV7.H14RSNP.1.P.C.pfm |
| Threshold to P-value map | ETV7.H14RSNP.1.P.C.thr |
| Motif in other formats | |
| JASPAR format | ETV7.H14RSNP.1.P.C_jaspar_format.txt |
| MEME format | ETV7.H14RSNP.1.P.C_meme_format.meme |
| Transfac format | ETV7.H14RSNP.1.P.C_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 237.0 | 472.0 | 304.0 | 69.0 |
| 02 | 740.0 | 92.0 | 171.0 | 79.0 |
| 03 | 5.0 | 1.0 | 1070.0 | 6.0 |
| 04 | 10.0 | 16.0 | 1050.0 | 6.0 |
| 05 | 1060.0 | 6.0 | 11.0 | 5.0 |
| 06 | 1028.0 | 2.0 | 46.0 | 6.0 |
| 07 | 470.0 | 23.0 | 550.0 | 39.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.219 | 0.436 | 0.281 | 0.064 |
| 02 | 0.684 | 0.085 | 0.158 | 0.073 |
| 03 | 0.005 | 0.001 | 0.989 | 0.006 |
| 04 | 0.009 | 0.015 | 0.97 | 0.006 |
| 05 | 0.98 | 0.006 | 0.01 | 0.005 |
| 06 | 0.95 | 0.002 | 0.043 | 0.006 |
| 07 | 0.434 | 0.021 | 0.508 | 0.036 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.131 | 0.554 | 0.116 | -1.348 |
| 02 | 1.002 | -1.066 | -0.455 | -1.215 |
| 03 | -3.698 | -4.596 | 1.37 | -3.559 |
| 04 | -3.143 | -2.731 | 1.351 | -3.559 |
| 05 | 1.361 | -3.559 | -3.061 | -3.698 |
| 06 | 1.33 | -4.286 | -1.741 | -3.559 |
| 07 | 0.55 | -2.398 | 0.706 | -1.899 |
| P-value | Threshold |
|---|---|
| 0.001 | 5.34686 |
| 0.0005 | 5.792095 |
| 0.0001 | 7.400645 |