| Motif | ETV7.H14INVIVO.1.P.C |
| Gene (human) | ETV7 (GeneCards) |
| Gene synonyms (human) | TEL2, TELB, TREF |
| Gene (mouse) | |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 1 |
| Quality | C |
| Motif | ETV7.H14INVIVO.1.P.C |
| Gene (human) | ETV7 (GeneCards) |
| Gene synonyms (human) | TEL2, TELB, TREF |
| Gene (mouse) | |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 1 |
| Quality | C |
| Motif length | 7 |
| Consensus | vAGGAAR |
| GC content | 49.01% |
| Information content (bits; total / per base) | 10.199 / 1.457 |
| Data sources | ChIP-Seq |
| Aligned words | 1000 |
| Previous names | ETV7.H12INVIVO.1.P.C |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 1 (7) | 0.598 | 0.61 | 0.408 | 0.427 | 0.629 | 0.641 | 1.31 | 1.327 | 3.0 | 4.658 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Overall, 2 experiments | median | 0.889 | 0.862 | 0.83 | 0.796 | 0.768 | 0.749 |
| best | 0.937 | 0.914 | 0.915 | 0.873 | 0.913 | 0.864 | |
| Methyl HT-SELEX, 1 experiments | median | 0.84 | 0.81 | 0.744 | 0.718 | 0.623 | 0.634 |
| best | 0.84 | 0.81 | 0.744 | 0.718 | 0.623 | 0.634 | |
| Non-Methyl HT-SELEX, 1 experiments | median | 0.937 | 0.914 | 0.915 | 0.873 | 0.913 | 0.864 |
| best | 0.937 | 0.914 | 0.915 | 0.873 | 0.913 | 0.864 | |
| rSNP benchmarking, SNP-SELEX | auROC | auPRC | Pearson r | Kendall tau |
|---|---|---|---|---|
| batch 1 | 0.774 | 0.157 | 0.603 | 0.358 |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Tryptophan cluster factors {3.5} (TFClass) |
| TF family | Ets-related {3.5.2} (TFClass) |
| TF subfamily | ETV6-like {3.5.2.6} (TFClass) |
| TFClass ID | TFClass: 3.5.2.6.2 |
| HGNC | HGNC:18160 |
| MGI | |
| EntrezGene (human) | GeneID:51513 (SSTAR profile) |
| EntrezGene (mouse) | |
| UniProt ID (human) | ETV7_HUMAN |
| UniProt ID (mouse) | |
| UniProt AC (human) | Q9Y603 (TFClass) |
| UniProt AC (mouse) | |
| GRECO-DB-TF | yes |
| ChIP-Seq | 1 human, 0 mouse |
| HT-SELEX | 1 |
| Methyl-HT-SELEX | 1 |
| Genomic HT-SELEX | 0 overall: 0 Lysate, 0 IVT, 0 GFPIVT |
| SMiLE-Seq | 0 |
| PBM | 0 |
| PCM | ETV7.H14INVIVO.1.P.C.pcm |
| PWM | ETV7.H14INVIVO.1.P.C.pwm |
| PFM | ETV7.H14INVIVO.1.P.C.pfm |
| Threshold to P-value map | ETV7.H14INVIVO.1.P.C.thr |
| Motif in other formats | |
| JASPAR format | ETV7.H14INVIVO.1.P.C_jaspar_format.txt |
| MEME format | ETV7.H14INVIVO.1.P.C_meme_format.meme |
| Transfac format | ETV7.H14INVIVO.1.P.C_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 253.0 | 488.0 | 238.0 | 21.0 |
| 02 | 944.0 | 50.0 | 4.0 | 2.0 |
| 03 | 2.0 | 2.0 | 995.0 | 1.0 |
| 04 | 10.0 | 16.0 | 970.0 | 4.0 |
| 05 | 995.0 | 1.0 | 4.0 | 0.0 |
| 06 | 975.0 | 2.0 | 16.0 | 7.0 |
| 07 | 324.0 | 39.0 | 606.0 | 31.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.253 | 0.488 | 0.238 | 0.021 |
| 02 | 0.944 | 0.05 | 0.004 | 0.002 |
| 03 | 0.002 | 0.002 | 0.995 | 0.001 |
| 04 | 0.01 | 0.016 | 0.97 | 0.004 |
| 05 | 0.995 | 0.001 | 0.004 | 0.0 |
| 06 | 0.975 | 0.002 | 0.016 | 0.007 |
| 07 | 0.324 | 0.039 | 0.606 | 0.031 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.012 | 0.666 | -0.049 | -2.405 |
| 02 | 1.324 | -1.582 | -3.783 | -4.213 |
| 03 | -4.213 | -4.213 | 1.376 | -4.525 |
| 04 | -3.066 | -2.653 | 1.351 | -3.783 |
| 05 | 1.376 | -4.525 | -3.783 | -4.982 |
| 06 | 1.356 | -4.213 | -2.653 | -3.362 |
| 07 | 0.258 | -1.821 | 0.881 | -2.04 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.668575 |
| 0.0005 | 5.342115 |
| 0.0001 | 7.723835 |