| Motif | ETV6.H14RSNP.0.PS.D |
| Gene (human) | ETV6 (GeneCards) |
| Gene synonyms (human) | TEL, TEL1 |
| Gene (mouse) | Etv6 |
| Gene synonyms (mouse) | Tel, Tel1 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | ETV6.H14RSNP.0.PS.D |
| Gene (human) | ETV6 (GeneCards) |
| Gene synonyms (human) | TEL, TEL1 |
| Gene (mouse) | Etv6 |
| Gene synonyms (mouse) | Tel, Tel1 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 10 |
| Consensus | vSMGGAAGYR |
| GC content | 61.71% |
| Information content (bits; total / per base) | 11.579 / 1.158 |
| Data sources | ChIP-Seq + HT-SELEX |
| Aligned words | 997 |
| Previous names | ETV6.H12RSNP.0.PS.D |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 5 (35) | 0.883 | 0.924 | 0.781 | 0.822 | 0.847 | 0.908 | 2.701 | 3.286 | 142.161 | 193.066 |
| Mouse | 4 (25) | 0.842 | 0.919 | 0.791 | 0.891 | 0.85 | 0.906 | 3.565 | 4.174 | 108.509 | 326.678 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Non-Methyl HT-SELEX, 2 experiments | median | 0.79 | 0.768 | 0.653 | 0.656 | 0.575 | 0.592 |
| best | 0.856 | 0.836 | 0.693 | 0.698 | 0.595 | 0.617 | |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Tryptophan cluster factors {3.5} (TFClass) |
| TF family | Ets-related {3.5.2} (TFClass) |
| TF subfamily | ETV6-like {3.5.2.6} (TFClass) |
| TFClass ID | TFClass: 3.5.2.6.1 |
| HGNC | HGNC:3495 |
| MGI | MGI:109336 |
| EntrezGene (human) | GeneID:2120 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:14011 (SSTAR profile) |
| UniProt ID (human) | ETV6_HUMAN |
| UniProt ID (mouse) | ETV6_MOUSE |
| UniProt AC (human) | P41212 (TFClass) |
| UniProt AC (mouse) | P97360 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 5 human, 4 mouse |
| HT-SELEX | 2 |
| Methyl-HT-SELEX | 0 |
| Genomic HT-SELEX | 0 overall: 0 Lysate, 0 IVT, 0 GFPIVT |
| SMiLE-Seq | 0 |
| PBM | 0 |
| PCM | ETV6.H14RSNP.0.PS.D.pcm |
| PWM | ETV6.H14RSNP.0.PS.D.pwm |
| PFM | ETV6.H14RSNP.0.PS.D.pfm |
| Threshold to P-value map | ETV6.H14RSNP.0.PS.D.thr |
| Motif in other formats | |
| JASPAR format | ETV6.H14RSNP.0.PS.D_jaspar_format.txt |
| MEME format | ETV6.H14RSNP.0.PS.D_meme_format.meme |
| Transfac format | ETV6.H14RSNP.0.PS.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 369.0 | 165.0 | 400.0 | 63.0 |
| 02 | 105.0 | 601.0 | 273.0 | 18.0 |
| 03 | 224.0 | 725.0 | 33.0 | 15.0 |
| 04 | 12.0 | 0.0 | 977.0 | 8.0 |
| 05 | 11.0 | 8.0 | 971.0 | 7.0 |
| 06 | 979.0 | 15.0 | 0.0 | 3.0 |
| 07 | 972.0 | 2.0 | 13.0 | 10.0 |
| 08 | 100.0 | 19.0 | 875.0 | 3.0 |
| 09 | 93.0 | 216.0 | 68.0 | 620.0 |
| 10 | 132.0 | 102.0 | 689.0 | 74.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.37 | 0.165 | 0.401 | 0.063 |
| 02 | 0.105 | 0.603 | 0.274 | 0.018 |
| 03 | 0.225 | 0.727 | 0.033 | 0.015 |
| 04 | 0.012 | 0.0 | 0.98 | 0.008 |
| 05 | 0.011 | 0.008 | 0.974 | 0.007 |
| 06 | 0.982 | 0.015 | 0.0 | 0.003 |
| 07 | 0.975 | 0.002 | 0.013 | 0.01 |
| 08 | 0.1 | 0.019 | 0.878 | 0.003 |
| 09 | 0.093 | 0.217 | 0.068 | 0.622 |
| 10 | 0.132 | 0.102 | 0.691 | 0.074 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.39 | -0.409 | 0.47 | -1.355 |
| 02 | -0.855 | 0.876 | 0.09 | -2.543 |
| 03 | -0.106 | 1.063 | -1.978 | -2.708 |
| 04 | -2.906 | -4.979 | 1.361 | -3.251 |
| 05 | -2.982 | -3.251 | 1.355 | -3.359 |
| 06 | 1.363 | -2.708 | -4.979 | -3.972 |
| 07 | 1.356 | -4.21 | -2.836 | -3.064 |
| 08 | -0.903 | -2.494 | 1.251 | -3.972 |
| 09 | -0.974 | -0.142 | -1.281 | 0.907 |
| 10 | -0.63 | -0.884 | 1.012 | -1.198 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.201985 |
| 0.0005 | 5.26237 |
| 0.0001 | 7.346905 |