ETV4.H14RSNP.1.SM.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ETV4.H14RSNP.1.SM.B
Gene (human)	ETV4 (GeneCards)
Gene synonyms (human)	E1AF, PEA3
Gene (mouse)	Etv4
Gene synonyms (mouse)	Pea-3, Pea3
LOGO
LOGO (reverse complement)
Motif subtype	1
Quality	B

Motif length	13
Consensus	nnACCGGAAGTdn
GC content	55.1%
Information content (bits; total / per base)	15.689 / 1.207
Data sources	HT-SELEX + Methyl-HT-SELEX
Aligned words	9786
Previous names	ETV4.H12RSNP.1.SM.B

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	4 (24)	0.786	0.922	0.662	0.838	0.749	0.912	2.034	3.362	39.357	291.215

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 8 experiments	median	0.999	0.999	0.997	0.995	0.989	0.986
Overall, 8 experiments	best	1.0	0.999	1.0	0.999	0.999	0.998
Methyl HT-SELEX, 3 experiments	median	0.999	0.998	0.997	0.995	0.99	0.986
Methyl HT-SELEX, 3 experiments	best	1.0	0.999	0.999	0.999	0.997	0.996
Non-Methyl HT-SELEX, 5 experiments	median	0.999	0.999	0.996	0.995	0.928	0.922
Non-Methyl HT-SELEX, 5 experiments	best	1.0	0.999	1.0	0.999	0.999	0.998

rSNP benchmarking, SNP-SELEX	auROC	auPRC	Pearson r	Kendall tau
batch 1	0.834	0.547	0.705	0.47
batch 2	0.947	0.86	0.871	0.722

TF superclass	Helix-turn-helix domains {3} (TFClass)
TF class	Tryptophan cluster factors {3.5} (TFClass)
TF family	Ets-related {3.5.2} (TFClass)
TF subfamily	ELK-like {3.5.2.2} (TFClass)
TFClass ID	TFClass: 3.5.2.2.5
HGNC	HGNC:3493
MGI	MGI:99423
EntrezGene (human)	GeneID:2118 (SSTAR profile)
EntrezGene (mouse)	GeneID:18612 (SSTAR profile)
UniProt ID (human)	ETV4_HUMAN
UniProt ID (mouse)	ETV4_MOUSE
UniProt AC (human)	P43268 (TFClass)
UniProt AC (mouse)	P28322 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	4 human, 0 mouse
HT-SELEX	5
Methyl-HT-SELEX	3
Genomic HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ETV4.H14RSNP.1.SM.B.pcm
PWM	ETV4.H14RSNP.1.SM.B.pwm
PFM	ETV4.H14RSNP.1.SM.B.pfm
Threshold to P-value map	ETV4.H14RSNP.1.SM.B.thr
Motif in other formats
JASPAR format	ETV4.H14RSNP.1.SM.B_jaspar_format.txt
MEME format	ETV4.H14RSNP.1.SM.B_meme_format.meme
Transfac format	ETV4.H14RSNP.1.SM.B_transfac_format.txt
Homer format	ETV4.H14RSNP.1.SM.B_homer_format_0.001.txt ETV4.H14RSNP.1.SM.B_homer_format_0.0005.txt ETV4.H14RSNP.1.SM.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	2950.25	1983.25	2599.25	2253.25
02	2349.75	1955.75	3816.75	1663.75
03	7884.0	70.0	890.0	942.0
04	88.0	9453.0	235.0	10.0
05	333.0	9453.0	0.0	0.0
06	0.0	0.0	9786.0	0.0
07	0.0	0.0	9786.0	0.0
08	9786.0	0.0	0.0	0.0
09	9417.0	1.0	0.0	368.0
10	394.0	53.0	9338.0	1.0
11	113.0	1263.0	253.0	8157.0
12	4398.5	838.5	3360.5	1188.5
13	3369.5	2606.5	2360.5	1449.5

PFM

	A	C	G	T
01	0.301	0.203	0.266	0.23
02	0.24	0.2	0.39	0.17
03	0.806	0.007	0.091	0.096
04	0.009	0.966	0.024	0.001
05	0.034	0.966	0.0	0.0
06	0.0	0.0	1.0	0.0
07	0.0	0.0	1.0	0.0
08	1.0	0.0	0.0	0.0
09	0.962	0.0	0.0	0.038
10	0.04	0.005	0.954	0.0
11	0.012	0.129	0.026	0.834
12	0.449	0.086	0.343	0.121
13	0.344	0.266	0.241	0.148

PWM

	A	C	G	T
01	0.187	-0.21	0.061	-0.082
02	-0.04	-0.224	0.444	-0.385
03	1.17	-3.523	-1.01	-0.953
04	-3.3	1.351	-2.334	-5.294
05	-1.988	1.351	-6.972	-6.972
06	-6.972	-6.972	1.386	-6.972
07	-6.972	-6.972	1.386	-6.972
08	1.386	-6.972	-6.972	-6.972
09	1.347	-6.61	-6.972	-1.889
10	-1.821	-3.791	1.339	-6.61
11	-3.056	-0.66	-2.261	1.204
12	0.586	-1.069	0.317	-0.721
13	0.32	0.063	-0.036	-0.523

Standard thresholds

P-value	Threshold
0.001	0.398965
0.0005	2.17876
0.0001	5.820235