DUX4.H14INVIVO.0.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	DUX4.H14INVIVO.0.P.B
Gene (human)	DUX4 (GeneCards)
Gene synonyms (human)	DUX10
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	B

Motif length	12
Consensus	TGATTRRRTTAh
GC content	23.59%
Information content (bits; total / per base)	16.79 / 1.399
Data sources	ChIP-Seq
Aligned words	1023
Previous names	DUX4.H12INVIVO.0.P.B

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	5 (27)	0.976	0.998	0.964	0.996	0.977	0.996	6.734	8.164	695.174	1277.18

rSNP benchmarking, ADASTRA	odds-ratio	-log-Fisher's P	Pearson r	Kendall tau
#	11.225	61.848	0.586	0.427

TF superclass	Helix-turn-helix domains {3} (TFClass)
TF class	Homeo domain factors {3.1} (TFClass)
TF family	Paired-related HD {3.1.3} (TFClass)
TF subfamily	DUX {3.1.3.7} (TFClass)
TFClass ID	TFClass: 3.1.3.7.5
HGNC	HGNC:50800
MGI
EntrezGene (human)	GeneID:100288687 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	DUX4_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q9UBX2 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	5 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0
Genomic HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	DUX4.H14INVIVO.0.P.B.pcm
PWM	DUX4.H14INVIVO.0.P.B.pwm
PFM	DUX4.H14INVIVO.0.P.B.pfm
Threshold to P-value map	DUX4.H14INVIVO.0.P.B.thr
Motif in other formats
JASPAR format	DUX4.H14INVIVO.0.P.B_jaspar_format.txt
MEME format	DUX4.H14INVIVO.0.P.B_meme_format.meme
Transfac format	DUX4.H14INVIVO.0.P.B_transfac_format.txt
Homer format	DUX4.H14INVIVO.0.P.B_homer_format_0.001.txt DUX4.H14INVIVO.0.P.B_homer_format_0.0005.txt DUX4.H14INVIVO.0.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	29.0	1.0	2.0	991.0
02	13.0	0.0	1008.0	2.0
03	1021.0	1.0	1.0	0.0
04	2.0	1.0	3.0	1017.0
05	3.0	4.0	11.0	1005.0
06	707.0	57.0	256.0	3.0
07	304.0	104.0	611.0	4.0
08	374.0	23.0	530.0	96.0
09	2.0	2.0	0.0	1019.0
10	0.0	14.0	2.0	1007.0
11	860.0	18.0	24.0	121.0
12	351.0	112.0	111.0	449.0

PFM

	A	C	G	T
01	0.028	0.001	0.002	0.969
02	0.013	0.0	0.985	0.002
03	0.998	0.001	0.001	0.0
04	0.002	0.001	0.003	0.994
05	0.003	0.004	0.011	0.982
06	0.691	0.056	0.25	0.003
07	0.297	0.102	0.597	0.004
08	0.366	0.022	0.518	0.094
09	0.002	0.002	0.0	0.996
10	0.0	0.014	0.002	0.984
11	0.841	0.018	0.023	0.118
12	0.343	0.109	0.109	0.439

PWM

	A	C	G	T
01	-2.126	-4.546	-4.234	1.35
02	-2.861	-5.001	1.366	-4.234
03	1.379	-4.546	-4.546	-5.001
04	-4.234	-4.546	-3.996	1.375
05	-3.996	-3.805	-3.007	1.364
06	1.013	-1.478	0.001	-3.996
07	0.172	-0.89	0.867	-3.805
08	0.378	-2.343	0.725	-0.969
09	-4.234	-4.234	-5.001	1.377
10	-5.001	-2.795	-4.234	1.365
11	1.208	-2.569	-2.303	-0.741
12	0.315	-0.817	-0.826	0.56

Standard thresholds

P-value	Threshold
0.001	0.911265
0.0005	2.39895
0.0001	5.601135