| Motif | DMTF1.H14INVIVO.0.PSGIB.A |
| Gene (human) | DMTF1 (GeneCards) |
| Gene synonyms (human) | DMP1 |
| Gene (mouse) | Dmtf1 |
| Gene synonyms (mouse) | Dmp1 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | A |
| Motif | DMTF1.H14INVIVO.0.PSGIB.A |
| Gene (human) | DMTF1 (GeneCards) |
| Gene synonyms (human) | DMP1 |
| Gene (mouse) | Dmtf1 |
| Gene synonyms (mouse) | Dmp1 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | A |
| Motif length | 14 |
| Consensus | nRddvCCCGGATGb |
| GC content | 60.87% |
| Information content (bits; total / per base) | 16.345 / 1.168 |
| Data sources | ChIP-Seq + HT-SELEX + Genomic HT-SELEX + SMiLe-Seq + PBM |
| Aligned words | 1000 |
| Previous names |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|
| Overall | 2 (2) | 0.914 | 0.938 | 0.889 | 0.914 | 0.771 | 0.805 | 211.574 | 248.377 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| overall, 2 experiments | median | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 |
| best | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | |
| Lysate, 1 experiments | median | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 |
| best | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | |
| GFPIVT, 1 experiments | median | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 |
| best | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | |
| Genomic HT-SELEX benchmarking | Centrality | pseudo-auROC | auROC | auPR | |
|---|---|---|---|---|---|
| overall, 2 experiments | median | 743.108 | 0.984 | 0.986 | 0.983 |
| best | 1121.509 | 0.994 | 0.992 | 0.984 | |
| Lysate, 1 experiments | median | 743.108 | 0.976 | 0.978 | 0.977 |
| best | 1121.509 | 0.988 | 0.987 | 0.983 | |
| GFPIVT, 1 experiments | median | 751.919 | 0.987 | 0.986 | 0.983 |
| best | 1063.921 | 0.994 | 0.992 | 0.984 | |
| SMiLE-Seq benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Overall, 2 experiments | median | 0.59 | 0.594 | 0.545 | 0.55 | 0.519 | 0.528 |
| best | 0.634 | 0.628 | 0.562 | 0.568 | 0.526 | 0.538 | |
| PBM benchmarking | auROC, QNZS | auPR, QNZS | auROC, SD | auPR, SD | |
|---|---|---|---|---|---|
| Overall, 4 experiments | median | 0.676 | 0.047 | 0.69 | 0.06 |
| best | 0.699 | 0.064 | 0.735 | 0.076 | |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Tryptophan cluster factors {3.5} (TFClass) |
| TF family | Myb/SANT domain {3.5.1} (TFClass) |
| TF subfamily | DMTF-like {3.5.1.7} (TFClass) |
| TFClass ID | TFClass: 3.5.1.7.1 |
| HGNC | HGNC:14603 |
| MGI | MGI:1344415 |
| EntrezGene (human) | GeneID:9988 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:23857 (SSTAR profile) |
| UniProt ID (human) | DMTF1_HUMAN |
| UniProt ID (mouse) | DMTF1_MOUSE |
| UniProt AC (human) | Q9Y222 (TFClass) |
| UniProt AC (mouse) | Q8CE22 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 2 human, 0 mouse |
| HT-SELEX | 2 overall: 1 Lysate, 0 IVT, 1 GFPIVT |
| Genomic HT-SELEX | 2 overall: 1 Lysate, 0 IVT, 1 GFPIVT |
| SMiLE-Seq | 2 |
| PBM | 4 |
| PCM | DMTF1.H14INVIVO.0.PSGIB.A.pcm |
| PWM | DMTF1.H14INVIVO.0.PSGIB.A.pwm |
| PFM | DMTF1.H14INVIVO.0.PSGIB.A.pfm |
| Threshold to P-value map | DMTF1.H14INVIVO.0.PSGIB.A.thr |
| Motif in other formats | |
| JASPAR format | DMTF1.H14INVIVO.0.PSGIB.A_jaspar_format.txt |
| MEME format | DMTF1.H14INVIVO.0.PSGIB.A_meme_format.meme |
| Transfac format | DMTF1.H14INVIVO.0.PSGIB.A_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 376.0 | 216.0 | 232.0 | 176.0 |
| 02 | 466.0 | 61.0 | 399.0 | 74.0 |
| 03 | 282.0 | 28.0 | 442.0 | 248.0 |
| 04 | 127.0 | 58.0 | 439.0 | 376.0 |
| 05 | 418.0 | 188.0 | 238.0 | 156.0 |
| 06 | 0.0 | 993.0 | 5.0 | 2.0 |
| 07 | 5.0 | 994.0 | 1.0 | 0.0 |
| 08 | 34.0 | 963.0 | 0.0 | 3.0 |
| 09 | 0.0 | 1.0 | 999.0 | 0.0 |
| 10 | 0.0 | 0.0 | 952.0 | 48.0 |
| 11 | 990.0 | 7.0 | 3.0 | 0.0 |
| 12 | 0.0 | 1.0 | 1.0 | 998.0 |
| 13 | 11.0 | 15.0 | 947.0 | 27.0 |
| 14 | 148.0 | 189.0 | 150.0 | 513.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.376 | 0.216 | 0.232 | 0.176 |
| 02 | 0.466 | 0.061 | 0.399 | 0.074 |
| 03 | 0.282 | 0.028 | 0.442 | 0.248 |
| 04 | 0.127 | 0.058 | 0.439 | 0.376 |
| 05 | 0.418 | 0.188 | 0.238 | 0.156 |
| 06 | 0.0 | 0.993 | 0.005 | 0.002 |
| 07 | 0.005 | 0.994 | 0.001 | 0.0 |
| 08 | 0.034 | 0.963 | 0.0 | 0.003 |
| 09 | 0.0 | 0.001 | 0.999 | 0.0 |
| 10 | 0.0 | 0.0 | 0.952 | 0.048 |
| 11 | 0.99 | 0.007 | 0.003 | 0.0 |
| 12 | 0.0 | 0.001 | 0.001 | 0.998 |
| 13 | 0.011 | 0.015 | 0.947 | 0.027 |
| 14 | 0.148 | 0.189 | 0.15 | 0.513 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.406 | -0.145 | -0.074 | -0.348 |
| 02 | 0.62 | -1.39 | 0.465 | -1.201 |
| 03 | 0.12 | -2.136 | 0.567 | -0.008 |
| 04 | -0.671 | -1.439 | 0.56 | 0.406 |
| 05 | 0.511 | -0.283 | -0.049 | -0.467 |
| 06 | -4.982 | 1.374 | -3.622 | -4.213 |
| 07 | -3.622 | 1.375 | -4.525 | -4.982 |
| 08 | -1.952 | 1.344 | -4.982 | -3.975 |
| 09 | -4.982 | -4.525 | 1.38 | -4.982 |
| 10 | -4.982 | -4.982 | 1.332 | -1.622 |
| 11 | 1.371 | -3.362 | -3.975 | -4.982 |
| 12 | -4.982 | -4.525 | -4.525 | 1.379 |
| 13 | -2.985 | -2.711 | 1.327 | -2.171 |
| 14 | -0.52 | -0.278 | -0.506 | 0.715 |
| P-value | Threshold |
|---|---|
| 0.001 | 1.06101 |
| 0.0005 | 2.55971 |
| 0.0001 | 5.78031 |