CEBPG.H14INVIVO.0.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	CEBPG.H14INVIVO.0.P.B
Gene (human)	CEBPG (GeneCards)
Gene synonyms (human)
Gene (mouse)	Cebpg
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	B

Motif length	12
Consensus	bRTTGCRYAAYh
GC content	40.09%
Information content (bits; total / per base)	13.912 / 1.159
Data sources	ChIP-Seq
Aligned words	991
Previous names	CEBPG.H12INVIVO.0.P.B

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	3 (21)	0.977	0.989	0.942	0.972	0.971	0.98	4.659	5.143	799.699	1018.699
Mouse	1 (7)	0.954	0.955	0.921	0.925	0.913	0.915	3.599	3.629	605.187	697.0

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 8 experiments	median	0.978	0.959	0.964	0.942	0.854	0.855
Overall, 8 experiments	best	0.998	0.997	0.995	0.991	0.988	0.982
Methyl HT-SELEX, 2 experiments	median	0.988	0.978	0.981	0.969	0.945	0.933
Methyl HT-SELEX, 2 experiments	best	0.996	0.993	0.995	0.991	0.988	0.982
Non-Methyl HT-SELEX, 6 experiments	median	0.95	0.939	0.841	0.834	0.716	0.736
Non-Methyl HT-SELEX, 6 experiments	best	0.998	0.997	0.99	0.983	0.981	0.971

rSNP benchmarking, ADASTRA	odds-ratio	-log-Fisher's P	Pearson r	Kendall tau
#	3.213	4.229	0.295	0.163

TF superclass	Basic domains {1} (TFClass)
TF class	Basic leucine zipper factors (bZIP) {1.1} (TFClass)
TF family	C/EBP-related {1.1.8} (TFClass)
TF subfamily	CEBP {1.1.8.1} (TFClass)
TFClass ID	TFClass: 1.1.8.1.3
HGNC	HGNC:1837
MGI	MGI:104982
EntrezGene (human)	GeneID:1054 (SSTAR profile)
EntrezGene (mouse)	GeneID:12611 (SSTAR profile)
UniProt ID (human)	CEBPG_HUMAN
UniProt ID (mouse)	CEBPG_MOUSE
UniProt AC (human)	P53567 (TFClass)
UniProt AC (mouse)	P53568 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	3 human, 1 mouse
HT-SELEX	6
Methyl-HT-SELEX	2
Genomic HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	CEBPG.H14INVIVO.0.P.B.pcm
PWM	CEBPG.H14INVIVO.0.P.B.pwm
PFM	CEBPG.H14INVIVO.0.P.B.pfm
Threshold to P-value map	CEBPG.H14INVIVO.0.P.B.thr
Motif in other formats
JASPAR format	CEBPG.H14INVIVO.0.P.B_jaspar_format.txt
MEME format	CEBPG.H14INVIVO.0.P.B_meme_format.meme
Transfac format	CEBPG.H14INVIVO.0.P.B_transfac_format.txt
Homer format	CEBPG.H14INVIVO.0.P.B_homer_format_0.001.txt CEBPG.H14INVIVO.0.P.B_homer_format_0.0005.txt CEBPG.H14INVIVO.0.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	95.0	149.0	323.0	424.0
02	680.0	65.0	238.0	8.0
03	0.0	0.0	0.0	991.0
04	0.0	1.0	0.0	990.0
05	20.0	0.0	933.0	38.0
06	0.0	990.0	0.0	1.0
07	500.0	23.0	421.0	47.0
08	52.0	383.0	1.0	555.0
09	552.0	439.0	0.0	0.0
10	991.0	0.0	0.0	0.0
11	4.0	329.0	85.0	573.0
12	320.0	326.0	62.0	283.0

PFM

	A	C	G	T
01	0.096	0.15	0.326	0.428
02	0.686	0.066	0.24	0.008
03	0.0	0.0	0.0	1.0
04	0.0	0.001	0.0	0.999
05	0.02	0.0	0.941	0.038
06	0.0	0.999	0.0	0.001
07	0.505	0.023	0.425	0.047
08	0.052	0.386	0.001	0.56
09	0.557	0.443	0.0	0.0
10	1.0	0.0	0.0	0.0
11	0.004	0.332	0.086	0.578
12	0.323	0.329	0.063	0.286

PWM

	A	C	G	T
01	-0.947	-0.504	0.264	0.534
02	1.005	-1.319	-0.04	-3.245
03	-4.974	-4.974	-4.974	1.381
04	-4.974	-4.517	-4.974	1.38
05	-2.441	-4.974	1.321	-1.837
06	-4.974	1.38	-4.974	-4.517
07	0.699	-2.312	0.527	-1.633
08	-1.535	0.433	-4.517	0.803
09	0.797	0.569	-4.974	-4.974
10	1.381	-4.974	-4.974	-4.974
11	-3.775	0.282	-1.057	0.835
12	0.254	0.273	-1.365	0.132

Standard thresholds

P-value	Threshold
0.001	2.50341
0.0005	3.8741
0.0001	6.916965